Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 7.3e-192 673.7 337 100.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.4e-78 297.4 229 71.2
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-75 287.7 242 66.1
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 5.3e-73 278.9 185 75.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 6.9e-73 278.5 195 71.8
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.2e-72 277.7 209 69.4
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.5e-72 277.3 211 70.6
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.6e-72 276.6 204 69.6
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 7.6e-72 275.0 206 67.5
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 7.6e-72 275.0 210 68.1
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.1e-70 271.2 228 64.0
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.2e-70 269.6 202 69.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 9.3e-70 268.1 239 59.4
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.6e-69 267.3 209 67.0
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.6e-69 267.3 201 67.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.1e-69 266.9 204 65.7
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 2.1e-69 266.9 201 67.7
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 2.7e-69 266.5 219 64.4
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 3.5e-69 266.2 213 66.7
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 4.6e-69 265.8 208 65.9
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 6.0e-69 265.4 210 65.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 7.9e-69 265.0 207 67.6
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 7.9e-69 265.0 204 67.2
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 7.9e-69 265.0 204 67.2
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 7.9e-69 265.0 222 64.9
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.0e-68 264.6 204 66.7
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.3e-68 264.2 229 62.0
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.7e-68 263.8 201 66.2
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.3e-68 263.5 202 67.8
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 3.0e-68 263.1 204 67.2
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 5.1e-68 262.3 214 63.6
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 6.6e-68 261.9 208 64.4
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.9e-67 260.4 207 64.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.9e-67 260.4 209 65.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.5e-67 260.0 207 65.2
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 2.5e-67 260.0 207 65.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.6e-67 258.8 202 65.3
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 5.6e-67 258.8 228 61.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 7.4e-67 258.5 206 63.6
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 7.4e-67 258.5 201 66.7
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.6e-66 257.3 205 63.4
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.6e-66 257.3 213 63.4
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.6e-66 257.3 210 63.8
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 2.1e-66 256.9 211 64.9
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.8e-66 256.5 234 58.5
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.8e-66 256.5 221 60.6
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.8e-66 256.5 208 66.3
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 3.6e-66 256.1 203 65.0
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 4.8e-66 255.8 205 64.9
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 8.1e-66 255.0 213 63.4
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 8.1e-66 255.0 206 65.5
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-65 254.6 195 71.3
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.8e-65 253.8 216 62.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.8e-65 253.8 216 62.0
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.8e-65 253.8 201 64.2
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.8e-65 253.8 211 64.0
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.4e-65 253.4 215 61.4
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 2.4e-65 253.4 205 63.9
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.1e-65 253.1 213 63.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.0e-65 252.7 213 63.4
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 9.0e-65 251.5 213 63.4
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 2.0e-64 250.4 208 62.5
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.6e-64 250.0 204 61.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 3.4e-64 249.6 236 58.9
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 4.5e-64 249.2 214 61.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 7.6e-64 248.4 204 64.2
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 9.9e-64 248.1 204 62.3
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 9.9e-64 248.1 208 62.0
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 2.9e-63 246.5 208 62.5
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 3.8e-63 246.1 206 61.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 4.9e-63 245.7 200 64.5
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 6.4e-63 245.4 204 61.3
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 6.4e-63 245.4 208 62.5
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 8.4e-63 245.0 237 58.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 5.5e-62 242.3 208 60.6
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.6e-61 240.7 251 54.6
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.7e-61 240.0 209 59.3
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 6.0e-61 238.8 208 59.6
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.8e-60 237.3 192 69.3
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 3.0e-60 236.5 209 58.4
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 6.7e-60 235.3 210 58.6
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 2.5e-59 233.4 227 54.2
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 1.3e-58 231.1 227 53.3
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 1.3e-58 231.1 207 57.0
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.8e-58 229.9 231 53.2
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 4.8e-58 229.2 204 58.8
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 6.2e-58 228.8 209 56.5
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 8.1e-58 228.4 201 58.7
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.4e-57 227.6 206 58.3
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.4e-57 227.6 207 55.6
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.4e-57 226.9 209 56.0
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 4.0e-57 226.1 234 53.8
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.2e-56 224.6 193 61.1
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 2.0e-56 223.8 252 52.0
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.2e-55 220.3 187 62.6
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.8e-55 219.5 185 62.7
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 3.2e-54 216.5 207 53.1
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 7.1e-54 215.3 229 55.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 9.3e-54 214.9 140 74.3
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.5e-53 213.0 240 52.1
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.5e-53 213.0 319 42.6
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 4.6e-53 212.6 204 55.9
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.0e-52 211.5 146 72.6
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.3e-52 211.1 205 53.2
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 6.7e-52 208.8 187 57.2
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.6e-50 204.1 158 67.1
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.4e-48 196.4 186 53.2
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 4.5e-48 196.1 203 52.2
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 4.5e-48 196.1 206 54.4
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.7e-47 194.1 189 52.9
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 5.1e-44 182.6 164 57.9
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 3.3e-35 153.3 149 55.0
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.1e-33 148.3 231 39.4
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 1.3e-31 141.4 142 54.2
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 6.5e-31 139.0 120 59.2
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.6e-29 134.4 128 55.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.5e-27 127.9 142 50.0
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.2e-21 108.2 171 45.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.1e-21 105.9 216 33.3
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 2.4e-17 94.0 85 55.3
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 9.1e-17 92.0 83 59.0
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 5.9e-16 89.4 71 67.6
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 5.9e-16 89.4 218 34.9
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.6e-13 81.3 55 72.7
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.0e-12 76.6 85 50.6
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 5.7e-11 72.8 96 45.8
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.3e-10 71.6 60 61.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.7e-10 70.1 52 61.5
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 3.7e-10 70.1 43 74.4
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-09 68.2 83 47.0
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.4e-09 67.4 83 47.0
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.0e-07 59.7 41 68.3
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 5.5e-06 56.2 42 71.4


User provided reference genes

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