Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 7.7e-200 700.3 354 100.0
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 4.3e-110 402.1 366 63.9
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 6.9e-108 394.8 397 59.4
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 1.3e-106 390.6 371 61.2
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.3e-103 379.8 360 61.1
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.1e-102 377.5 360 60.3
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.1e-102 377.5 360 60.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.1e-102 377.5 360 60.3
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 3.3e-102 375.9 360 60.3
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 3.3e-102 375.9 360 60.3
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 4.3e-102 375.6 360 60.3
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 4.3e-102 375.6 359 60.2
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 5.7e-102 375.2 360 60.0
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.6e-101 373.6 359 59.6
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.2e-101 373.2 360 60.3
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 4.8e-101 372.1 360 59.2
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 6.3e-101 371.7 359 59.6
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 6.3e-101 371.7 361 59.8
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 6.3e-101 371.7 360 59.2
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 6.3e-101 371.7 359 59.6
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 8.2e-101 371.3 358 60.9
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 8.2e-101 371.3 361 58.7
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 8.2e-101 371.3 359 60.2
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.1e-100 370.9 360 59.7
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.1e-100 370.9 360 59.7
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 1.1e-100 370.9 360 59.7
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.1e-100 370.9 360 58.6
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.4e-100 370.5 359 59.6
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.8e-100 370.2 360 59.4
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 1.8e-100 370.2 360 60.0
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 2.4e-100 369.8 359 59.3
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.4e-100 369.8 359 59.6
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.4e-100 369.8 359 58.8
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 2.4e-100 369.8 357 59.9
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 2.4e-100 369.8 360 59.2
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 2.4e-100 369.8 360 59.2
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.1e-100 369.4 357 59.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 3.1e-100 369.4 357 59.9
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 3.1e-100 369.4 359 59.6
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 3.1e-100 369.4 357 59.9
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 3.1e-100 369.4 359 59.9
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 3.1e-100 369.4 361 59.3
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.1e-100 369.4 359 59.3
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 4.1e-100 369.0 359 59.3
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 4.1e-100 369.0 360 59.2
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.1e-100 369.0 360 59.2
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 4.1e-100 369.0 359 59.3
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 5.3e-100 368.6 359 59.6
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.3e-100 368.6 360 59.4
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 5.3e-100 368.6 357 59.9
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 5.3e-100 368.6 359 59.1
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 6.9e-100 368.2 357 59.7
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 6.9e-100 368.2 360 59.2
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 6.9e-100 368.2 357 59.7
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 9.0e-100 367.9 360 58.9
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 9.0e-100 367.9 359 59.6
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 1.2e-99 367.5 360 58.9
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.2e-99 367.5 357 59.7
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 1.5e-99 367.1 360 58.9
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 1.5e-99 367.1 360 58.1
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 1.5e-99 367.1 360 58.6
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.5e-99 367.1 360 58.9
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.0e-99 366.7 361 58.7
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 2.0e-99 366.7 360 59.2
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.6e-99 366.3 359 58.8
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 3.4e-99 365.9 359 59.1
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 4.5e-99 365.5 359 58.2
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 4.5e-99 365.5 359 58.2
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 4.5e-99 365.5 359 58.2
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 4.5e-99 365.5 359 58.2
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 4.5e-99 365.5 357 59.7
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 4.5e-99 365.5 359 58.8
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 4.5e-99 365.5 360 57.5
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 5.9e-99 365.2 359 58.8
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 7.6e-99 364.8 357 59.4
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 7.6e-99 364.8 212 88.7
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 7.6e-99 364.8 357 59.4
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.0e-98 364.4 359 58.5
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.0e-98 364.4 361 58.7
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.0e-98 364.4 350 59.7
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.7e-98 363.6 357 58.8
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.7e-98 363.6 359 57.9
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 1.7e-98 363.6 359 57.9
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 1.7e-98 363.6 360 58.6
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.7e-98 363.6 364 58.0
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.2e-98 363.2 359 58.5
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-98 363.2 360 58.3
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 2.9e-98 362.8 359 58.2
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.9e-98 362.8 360 58.1
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 5.0e-98 362.1 359 58.2
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 6.5e-98 361.7 360 57.8
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 6.5e-98 361.7 360 57.8
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 8.5e-98 361.3 359 58.2
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 8.5e-98 361.3 359 58.2
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 1.1e-97 360.9 359 57.4
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.4e-97 360.5 359 57.9
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.4e-97 360.5 212 87.3
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-97 360.1 357 58.3
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 1.9e-97 360.1 359 57.9
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 1.9e-97 360.1 359 57.9
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 2.5e-97 359.8 359 57.9
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.5e-97 359.8 360 57.8
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.2e-97 359.4 359 57.1
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 3.2e-97 359.4 356 58.7
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 4.2e-97 359.0 357 58.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 4.2e-97 359.0 359 57.9
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 5.5e-97 358.6 359 57.7
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 5.5e-97 358.6 359 57.7
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 5.5e-97 358.6 359 56.8
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 5.5e-97 358.6 213 87.8
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 7.2e-97 358.2 361 58.2
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 9.4e-97 357.8 359 57.4
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 9.4e-97 357.8 360 57.2
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 1.2e-96 357.5 212 85.4
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.2e-96 357.5 359 57.1
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.2e-96 357.5 359 57.7
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.2e-96 357.5 361 58.2
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.6e-96 357.1 359 57.4
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 1.6e-96 357.1 361 57.9
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 7.9e-96 354.8 359 57.1
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.4e-95 354.0 360 57.8
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.8e-95 353.6 399 54.4
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.8e-95 353.6 359 56.0
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 3.0e-95 352.8 360 56.9
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 3.9e-95 352.4 213 86.4
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.7e-95 351.7 359 56.3
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.5e-94 350.5 358 57.5
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 2.5e-94 349.7 376 55.1
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 9.7e-94 347.8 404 53.0
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.7e-93 347.1 419 50.4
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 2.9e-90 336.3 218 80.3
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 5.0e-90 335.5 361 54.8
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 7.2e-89 331.6 215 79.1
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 3.6e-88 329.3 218 78.9
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 2.3e-87 326.6 361 53.5
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.1e-86 324.3 218 76.1
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 1.5e-86 323.9 218 77.1
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.2e-83 314.3 318 57.2
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.2e-83 314.3 318 57.2
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.7e-82 310.5 376 51.6
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 1.7e-82 310.5 198 84.3
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.0e-78 297.0 186 84.9
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.1e-76 291.2 203 75.9
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 3.2e-73 279.6 179 82.1
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.8e-71 273.9 348 48.9
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 4.0e-71 272.7 172 83.7
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 4.0e-71 272.7 172 83.7
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-66 256.9 133 93.2
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 8.0e-64 248.4 278 52.2
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 8.3e-53 211.8 245 51.0
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.5e-49 201.1 232 45.3
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.6e-48 196.4 138 73.9
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 2.5e-41 173.7 203 46.8
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 4.4e-38 162.9 211 44.1
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 3.7e-37 159.8 87 89.7
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 2.7e-35 153.7 199 50.8
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 8.1e-32 142.1 184 50.0
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.4e-30 136.7 78 89.7
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 7.3e-25 119.0 206 38.8
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 9.9e-22 108.6 75 76.0
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 4.9e-21 106.3 82 73.2
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 4.6e-19 99.8 82 68.3
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.7e-18 97.8 208 37.0
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 1.5e-17 94.7 61 77.0
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 9.6e-17 92.0 215 37.7
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 8.1e-16 89.0 51 84.3
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.8e-15 87.8 253 30.0
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.2e-11 75.1 79 58.2
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.0e-10 72.0 38 86.8
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.3e-10 71.6 40 92.5
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 3.9e-10 70.1 41 78.0
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 8.7e-10 68.9 41 87.8
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 1.1e-09 68.6 74 56.8
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.9e-09 67.8 39 87.2
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 3.1e-07 60.5 88 47.7
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.8e-06 56.2 40 75.0


User provided reference genes

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