Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 2327.4 1152 100.0
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1616.7 1280 67.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1501.9 1180 67.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1466.4 1181 65.5
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1314.3 1181 59.7
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1308.9 1200 59.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1252.3 1171 57.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1246.9 1220 55.5
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1245.7 1178 56.8
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1243.8 1166 56.8
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1241.5 1168 56.4
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1241.1 1172 56.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1240.3 1177 56.3
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1167 56.6
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1235.7 1173 56.4
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1223.0 1178 54.9
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1220.3 1174 54.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1218.8 1185 55.4
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1216.8 1167 55.1
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1214.1 1209 55.8
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1211.1 1190 56.2
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1210.3 1179 54.7
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1200.3 1186 54.5
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1198.3 1168 54.8
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1191.8 1169 54.3
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1191.0 1178 53.4
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1191.0 1177 54.4
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1188.3 1223 53.6
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1187.6 1209 53.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1183.7 1181 55.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1180.2 1167 54.0
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1174.8 1174 53.3
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1172.1 1193 53.7
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1169.8 1193 53.7
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1167.9 1194 53.7
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1180 54.6
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1161.7 1175 53.1
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1159.1 1171 52.9
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1157.1 1176 52.9
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1153.7 1177 52.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1152.5 1169 52.9
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1151.7 1173 53.2
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1151.0 1181 52.8
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1151.0 1182 53.4
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1148.7 1167 52.7
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1146.0 1171 52.8
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1144.4 1173 53.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1143.6 1186 52.5
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1142.5 1181 52.6
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1141.3 1186 52.4
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1140.9 1177 52.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1140.9 1179 52.7
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1140.2 1173 53.5
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1139.0 1131 54.8
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1133.2 1203 51.5
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1130.9 1181 52.2
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1129.8 1181 52.2
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1127.9 1181 51.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1127.5 1177 51.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1126.7 1202 51.0
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1126.3 1170 52.1
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1126.3 1136 53.0
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1124.4 1209 51.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1120.1 1171 51.2
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1119.0 1167 52.1
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1117.8 1177 51.8
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1117.1 1177 51.7
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1116.3 1179 52.0
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1114.0 1181 51.9
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1113.2 1178 51.7
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1112.8 1161 51.2
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1109.4 1177 51.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1108.2 1177 51.5
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1105.5 1177 51.5
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1102.4 1165 50.6
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1099.0 1177 50.8
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1098.6 1177 51.3
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1097.0 1177 51.2
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1092.0 1215 51.1
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1089.7 1220 49.9
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1077.0 1178 50.9
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 7.9e-312 1074.7 1179 50.6
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 2.6e-305 1052.4 1172 49.8
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 3.7e-304 1048.5 1170 49.3
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 2.3e-301 1039.3 1175 49.7
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 2.4e-290 1002.7 1177 48.2
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.9e-287 993.0 1171 46.7
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 2.4e-287 992.6 1176 47.6
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 1.6e-283 979.9 1140 46.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 9.3e-279 964.1 1068 50.0
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.4e-266 923.7 1178 45.8
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 1.2e-265 920.6 977 50.9
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.7e-246 856.3 1181 41.5
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-239 832.4 1063 46.8
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 9.7e-228 794.7 1135 41.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 6.8e-205 718.8 1015 43.1
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.7e-198 696.0 547 64.5
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 6.8e-197 692.2 793 48.8
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 4.9e-195 686.0 1171 36.0
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.9e-194 684.1 877 45.6
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.1e-189 668.3 718 49.9
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.6e-185 654.4 914 43.8
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 6.0e-185 652.5 840 45.5
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-177 627.9 760 48.2
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.7e-161 573.9 866 39.0
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.8e-160 571.2 650 50.6
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 4.0e-157 560.1 554 53.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 5.3e-157 559.7 1132 33.4
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 8.4e-155 552.4 620 49.7
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.4e-154 550.8 858 38.7
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.2e-153 548.5 516 54.5
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 4.8e-150 536.6 1165 33.6
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.1e-135 488.8 950 32.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.9e-130 471.5 535 50.5
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.2e-123 448.0 356 62.6
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-121 442.2 369 62.3
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 7.0e-117 426.4 483 46.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 3.3e-111 407.5 343 57.4
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.7e-110 404.1 446 51.1
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.2e-100 372.5 466 47.2
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 2.4e-93 348.2 222 77.5
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 5.0e-83 313.9 744 30.1
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.9e-69 268.9 291 48.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.5e-66 259.2 249 55.0
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 9.5e-66 256.5 255 55.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.1e-65 255.4 1192 24.9
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.2e-64 250.8 509 34.6
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 9.9e-55 219.9 179 63.7
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 5.4e-53 214.2 253 47.8
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 7.1e-53 213.8 219 53.9
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 7.9e-44 183.7 856 25.0
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.6e-42 176.8 205 45.4
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 5.3e-40 171.0 870 24.6
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-38 166.0 439 31.7
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-37 163.3 105 75.2
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-37 161.4 204 45.1
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 9.6e-34 150.2 187 45.5
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 4.8e-33 147.9 106 67.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 5.8e-31 141.0 418 29.4
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.9e-30 137.9 118 61.9
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.3e-27 129.8 106 61.3
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-26 126.7 192 38.5
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.1e-24 120.2 86 68.6
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 2.9e-22 112.1 196 38.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.6e-20 105.1 65 70.8
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.5e-18 99.0 67 68.7
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 6.3e-17 94.4 68 63.2
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.2e-15 90.1 70 62.9
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 5.0e-14 84.7 124 39.5
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.6e-12 79.7 70 55.7
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-10 73.2 81 46.9
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.5e-10 73.2 67 56.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.4e-08 66.6 53 52.8


User provided reference genes

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