Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15462 Vaccinium macrocarpon HOM05D002618 ORTHO05D002753 1.3e-48 196.1 98 100.0
Rhsim02G0042100 Rhododendron simsii HOM05D002618 ORTHO05D002753 2.0e-33 145.6 95 81.1
CiPaw.02G108800 Carya illinoinensis HOM05D002618 ORTHO05D002753 2.8e-19 98.6 97 60.8
Migut.N00288 Erythranthe guttata HOM05D002618 ORTHO05D002753 8.2e-19 97.1 104 57.7
Haze_11425 Corylus avellana HOM05D002618 ORTHO05D002753 3.1e-18 95.1 96 56.2
GSVIVG01027861001 Vitis vinifera HOM05D002618 ORTHO05D002753 3.1e-18 95.1 97 60.8
COL.COLO4_15925 Corchorus olitorius HOM05D002618 ORTHO05D002753 1.2e-17 93.2 96 54.2
SalBow3G2216 Salvia bowleyana HOM05D002618 ORTHO05D002753 3.8e-16 88.2 103 55.3
Manes.03G161900 Manihot esculenta HOM05D002618 ORTHO05D002753 1.1e-15 86.7 96 56.2
Thecc.04G259700 Theobroma cacao HOM05D002618 ORTHO05D002753 1.1e-15 86.7 96 52.1
TAR362G0858 Trochodendron aralioides HOM05D002618 ORTHO05D002753 1.1e-15 86.7 95 55.8
Lj6P625T16 Lonicera japonica HOM05D002618 ORTHO05D002753 1.5e-15 86.3 90 56.7
Lj6P626T15 Lonicera japonica HOM05D002618 ORTHO05D002753 1.5e-15 86.3 90 56.7
CANSAT56G2256 Cannabis sativa HOM05D002618 ORTHO05D002753 3.2e-15 85.1 90 56.7
QL06p019928 Quercus lobata HOM05D002618 ORTHO05D002753 3.2e-15 85.1 104 54.8
SGA_v2.0_scaffold498G52476 Striga asiatica HOM05D002618 ORTHO05D002753 3.2e-15 85.1 100 56.0
Sabra10G0038200 Salix brachista HOM05D002618 ORTHO05D002753 7.2e-15 84.0 97 54.6
Actinidia39915 Actinidia chinensis HOM05D002618 ORTHO05D002753 1.6e-14 82.8 83 63.9
Prupe.1G044300 Prunus persica HOM05D002618 ORTHO05D002753 2.1e-14 82.4 96 56.2
Duzib151G1024 Durio zibethinus HOM05D002618 ORTHO05D002753 2.7e-14 82.0 97 48.5
MSTRG.4152 Avicennia marina HOM05D002618 ORTHO05D002753 3.6e-14 81.6 99 51.5
Duzib052G0662 Durio zibethinus HOM05D002618 ORTHO05D002753 3.6e-14 81.6 96 50.0
Gorai.005G051600 Gossypium raimondii HOM05D002618 ORTHO05D002753 3.6e-14 81.6 96 50.0
Gohir.A09G228400 Gossypium hirsutum HOM05D002618 ORTHO05D002753 6.1e-14 80.9 87 55.2
Gohir.D09G229500 Gossypium hirsutum HOM05D002618 ORTHO05D002753 6.1e-14 80.9 87 55.2
PGR031G1536 Punica granatum HOM05D002618 ORTHO05D002753 6.1e-14 80.9 96 55.2
Gorai.006G252200 Gossypium raimondii HOM05D002618 ORTHO05D002753 8.0e-14 80.5 87 55.2
Gohir.D02G046700 Gossypium hirsutum HOM05D002618 ORTHO05D002753 1.0e-13 80.1 87 54.0
CiPaw.01G181000 Carya illinoinensis HOM05D002618 ORTHO05D002753 1.8e-13 79.3 96 51.0
MSTRG.24669 Avicennia marina HOM05D002618 ORTHO05D002753 2.3e-13 79.0 106 51.9
Dinv34654 Davidia involucrata HOM05D002618 ORTHO05D002753 2.3e-13 79.0 99 49.5
CSS0032980 Camellia sinensis var. sinensis HOM05D002618 ORTHO05D002753 6.8e-13 77.4 91 54.9
Potri.010G068800 Populus trichocarpa HOM05D002618 ORTHO05D002753 8.8e-13 77.0 97 51.5
Actinidia11360 Actinidia chinensis HOM05D002618 ORTHO05D002753 2.0e-12 75.9 62 66.1
Sed0001290 Sechium edule HOM05D002618 ORTHO05D002753 2.0e-12 75.9 94 51.1
CiPaw.03G268100 Carya illinoinensis HOM05D002618 ORTHO05D002753 2.6e-12 75.5 98 52.0
Haze_24668 Corylus avellana HOM05D002618 ORTHO05D002753 2.6e-12 75.5 85 52.9
Haze_24673 Corylus avellana HOM05D002618 ORTHO05D002753 2.6e-12 75.5 85 52.9
Dinv27082 Davidia involucrata HOM05D002618 ORTHO05D002753 3.4e-12 75.1 67 61.2
Dinv29830 Davidia involucrata HOM05D002618 ORTHO05D002753 3.4e-12 75.1 85 55.3
TAR365G0501 Trochodendron aralioides HOM05D002618 ORTHO05D002753 3.4e-12 75.1 96 51.0
TWI09G0350 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 4.4e-12 74.7 99 54.5
Lj2P1145T15 Lonicera japonica HOM05D002618 ORTHO05D002753 5.7e-12 74.3 91 56.0
Lj2P1146T14 Lonicera japonica HOM05D002618 ORTHO05D002753 5.7e-12 74.3 91 56.0
Oeu014753.1 Olea europaea HOM05D002618 ORTHO05D002753 7.5e-12 73.9 102 50.0
Atru.chr4.1999 Acer truncatum HOM05D002618 ORTHO05D002753 1.3e-11 73.2 94 50.0
Sc25g0003630 Simmondsia chinensis HOM05D002618 ORTHO05D002753 1.3e-11 73.2 77 58.4
Manes.13G037700 Manihot esculenta HOM05D002618 ORTHO05D002753 1.7e-11 72.8 93 52.7
Potri.002G259400 Populus trichocarpa HOM05D002618 ORTHO05D002753 1.7e-11 72.8 84 51.2
TAR633G1023 Trochodendron aralioides HOM05D002618 ORTHO05D002753 1.7e-11 72.8 88 54.5
Rhsim01G0261600 Rhododendron simsii HOM05D002618 ORTHO05D002753 2.8e-11 72.0 97 49.5
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 4.8e-11 71.2 92 45.7
EL10Ac3g04974 Beta vulgaris HOM05D002618 ORTHO05D002753 4.8e-11 71.2 45 77.8
Nn1g02848 Nelumbo nucifera HOM05D002618 ORTHO05D002753 4.8e-11 71.2 85 52.9
Sabra02G0197400 Salix brachista HOM05D002618 ORTHO05D002753 4.8e-11 71.2 85 50.6
TWI73G0394 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 4.8e-11 71.2 101 52.5
AUR62015540 Chenopodium quinoa HOM05D002618 ORTHO05D002753 6.3e-11 70.9 44 81.8
ECA248G1895 Erigeron canadensis HOM05D002618 ORTHO05D002753 8.3e-11 70.5 96 50.0
CSS0047601 Camellia sinensis var. sinensis HOM05D002618 ORTHO05D002753 1.1e-10 70.1 103 48.5
AUR62002169 Chenopodium quinoa HOM05D002618 ORTHO05D002753 1.1e-10 70.1 63 61.9
Nn3g19727 Nelumbo nucifera HOM05D002618 ORTHO05D002753 1.1e-10 70.1 86 51.2
Actinidia37534 Actinidia chinensis HOM05D002618 ORTHO05D002753 1.4e-10 69.7 95 47.4
Ah.04g155500 Amaranthus hybridus HOM05D002618 ORTHO05D002753 1.4e-10 69.7 44 79.5
CiPaw.04G188700 Carya illinoinensis HOM05D002618 ORTHO05D002753 1.4e-10 69.7 94 47.9
Glyma.10G039100 Glycine max HOM05D002618 ORTHO05D002753 1.4e-10 69.7 91 45.1
PSO266G0068 Papaver somniferum HOM05D002618 ORTHO05D002753 2.4e-10 68.9 79 50.6
RcHm_v2.0_Chr4g0394481 Rosa chinensis HOM05D002618 ORTHO05D002753 2.4e-10 68.9 101 46.5
MD13G1217500 Malus domestica HOM05D002618 ORTHO05D002753 4.1e-10 68.2 89 51.7
Oeu024801.1 Olea europaea HOM05D002618 ORTHO05D002753 4.1e-10 68.2 99 46.5
CsaV3_3G011900 Cucumis sativus L. HOM05D002618 ORTHO05D002753 5.4e-10 67.8 95 49.5
RcHm_v2.0_Chr6g0287331 Rosa chinensis HOM05D002618 ORTHO05D002753 5.4e-10 67.8 93 46.2
Solyc09g090380.1 Solanum lycopersicum HOM05D002618 ORTHO05D002753 5.4e-10 67.8 101 41.6
TAR636G2463 Trochodendron aralioides HOM05D002618 ORTHO05D002753 5.4e-10 67.8 91 46.2
Hma1.2p1_1112F.1_g258510 Hydrangea macrophylla HOM05D002618 ORTHO05D002753 7.0e-10 67.4 83 51.8
Sed0009787 Sechium edule HOM05D002618 ORTHO05D002753 7.0e-10 67.4 86 50.0
MBI07_g31317_MAGBIO Magnolia biondii HOM05D002618 ORTHO05D002753 9.1e-10 67.0 85 50.6
MD05G1192900 Malus domestica HOM05D002618 ORTHO05D002753 9.1e-10 67.0 63 57.1
Oeu055462.1 Olea europaea HOM05D002618 ORTHO05D002753 9.1e-10 67.0 92 46.7
Sopen09g033290 Solanum pennellii HOM05D002618 ORTHO05D002753 9.1e-10 67.0 100 44.0
CANSAT78G1482 Cannabis sativa HOM05D002618 ORTHO05D002753 1.2e-09 66.6 104 44.2
MELO3C006402.2 Cucumis melo HOM05D002618 ORTHO05D002753 1.2e-09 66.6 94 46.8
PGSC0003DMG400042837 Solanum tuberosum HOM05D002618 ORTHO05D002753 1.2e-09 66.6 98 40.8
Eucgr.H00138 Eucalyptus grandis HOM05D002618 ORTHO05D002753 1.6e-09 66.2 107 43.9
Hma1.2p1_0273F.1_g109390 Hydrangea macrophylla HOM05D002618 ORTHO05D002753 1.6e-09 66.2 89 43.8
Lalb_Chr21g0312201 Lupinus albus HOM05D002618 ORTHO05D002753 2.0e-09 65.9 98 48.0
MD16G1222600 Malus domestica HOM05D002618 ORTHO05D002753 2.0e-09 65.9 105 43.8
AL1G13610 Arabidopsis lyrata HOM05D002618 ORTHO05D002753 2.7e-09 65.5 105 40.0
HanXRQChr05g0160751 Helianthus annuus HOM05D002618 ORTHO05D002753 2.7e-09 65.5 94 44.7
Cfa002461 Carpinus fangiana HOM05D002618 ORTHO05D002753 3.5e-09 65.1 88 51.1
MD10G1179300 Malus domestica HOM05D002618 ORTHO05D002753 3.5e-09 65.1 61 54.1
Cpa.g.sc44.29 Carica papaya HOM05D002618 ORTHO05D002753 4.5e-09 64.7 102 45.1
Manes.12G034900 Manihot esculenta HOM05D002618 ORTHO05D002753 4.5e-09 64.7 93 49.5
Lsat_1_v5_gn_5_182541 Lactuca sativa HOM05D002618 ORTHO05D002753 5.9e-09 64.3 91 44.0
SGA_v2.0_scaffold31G12653 Striga asiatica HOM05D002618 ORTHO05D002753 5.9e-09 64.3 109 46.8
A10p02510 Brassica napus HOM05D002618 ORTHO05D002753 7.7e-09 63.9 96 44.8
BcaC05g24476 Brassica carinata HOM05D002618 ORTHO05D002753 1.0e-08 63.5 95 42.1
BolC5t29010H Brassica oleracea HOM05D002618 ORTHO05D002753 1.0e-08 63.5 95 42.1
BraA10t42519Z Brassica rapa HOM05D002618 ORTHO05D002753 1.0e-08 63.5 96 44.8
CARHR179230 Cardamine hirsuta HOM05D002618 ORTHO05D002753 1.0e-08 63.5 98 44.9
Lalb_Chr21g0314041 Lupinus albus HOM05D002618 ORTHO05D002753 1.0e-08 63.5 95 42.1
Ca_09845_v3 Cicer arietinum L. HOM05D002618 ORTHO05D002753 1.3e-08 63.2 96 44.8
CDE11G0651 Ceratophyllum demersum HOM05D000145 ORTHO05D001435 1.7e-08 62.8 77 45.5
Nitab4.5_0007995g0010 Nicotiana tabacum HOM05D002618 ORTHO05D002753 1.7e-08 62.8 40 77.5
C05p02320 Brassica napus HOM05D002618 ORTHO05D002753 2.9e-08 62.0 95 41.1
Ciclev10022665m.g Citrus clementina HOM05D002618 ORTHO05D002753 2.9e-08 62.0 82 47.6
Oeu035718.1 Olea europaea HOM05D002618 ORTHO05D002753 2.9e-08 62.0 61 55.7
Phvul.007G190700 Phaseolus vulgaris HOM05D002618 ORTHO05D002753 2.9e-08 62.0 102 41.2
Aqoxy2G03709 Aquilegia oxysepala HOM05D002618 ORTHO05D002753 3.8e-08 61.6 88 43.2
Aqoxy5G00180 Aquilegia oxysepala HOM05D002618 ORTHO05D002753 3.8e-08 61.6 101 46.5
COL.COLO4_20570 Corchorus olitorius HOM05D002618 ORTHO05D002753 3.8e-08 61.6 92 42.4
Sed0025704 Sechium edule HOM05D002618 ORTHO05D002753 3.8e-08 61.6 85 47.1
THA.LOC104826047 Tarenaya hassleriana HOM05D002618 ORTHO05D002753 3.8e-08 61.6 101 42.6
FvH4_2g20950 Fragaria vesca HOM05D002618 ORTHO05D002753 5.0e-08 61.2 90 48.9
FAN24G2640 Fragaria x ananassa HOM05D002618 ORTHO05D002753 5.0e-08 61.2 90 48.9
unitig_899.g15638 Utricularia gibba HOM05D002618 ORTHO05D002753 5.0e-08 61.2 101 44.6
Nitab4.5_0000044g0630 Nicotiana tabacum HOM05D002618 ORTHO05D002753 6.5e-08 60.8 40 75.0
Atru.chr5.1780 Acer truncatum HOM05D002618 ORTHO05D002753 8.5e-08 60.5 88 47.7
Psat6g062000 Pisum sativum HOM05D002618 ORTHO05D002753 8.5e-08 60.5 111 37.8
Oeu035724.1 Olea europaea HOM05D002618 ORTHO05D002753 1.1e-07 60.1 103 41.7
FAN15G0144 Fragaria x ananassa HOM05D002618 ORTHO05D002753 1.5e-07 59.7 87 49.4
HanXRQChr15g0467291 Helianthus annuus HOM05D002618 ORTHO05D002753 1.5e-07 59.7 78 46.2
Ca_09659_v3 Cicer arietinum L. HOM05D002618 ORTHO05D002753 1.9e-07 59.3 105 38.1
BcaC04g21872 Brassica carinata HOM05D002618 ORTHO05D002753 2.5e-07 58.9 61 47.5
BcaC07g42218 Brassica carinata HOM05D002618 ORTHO05D002753 2.5e-07 58.9 106 38.7
C08p52530 Brassica napus HOM05D002618 ORTHO05D002753 2.5e-07 58.9 106 38.7
C09p26310 Brassica napus HOM05D002618 ORTHO05D002753 2.5e-07 58.9 61 47.5
BolC8t52780H Brassica oleracea HOM05D002618 ORTHO05D002753 2.5e-07 58.9 106 38.7
BolC9t55534H Brassica oleracea HOM05D002618 ORTHO05D002753 2.5e-07 58.9 61 47.5
FAN20G1888 Fragaria x ananassa HOM05D003054 ORTHO05D003376 2.5e-07 58.9 91 47.3
FAN27G0166 Fragaria x ananassa HOM05D002618 ORTHO05D002753 2.5e-07 58.9 90 47.8
Medtr1g069640 Medicago truncatula HOM05D002618 ORTHO05D002753 2.5e-07 58.9 97 47.4
Sp1g02840 Schrenkiella parvula HOM05D002618 ORTHO05D002753 2.5e-07 58.9 92 40.2
BraA09t42144Z Brassica rapa HOM05D002618 ORTHO05D002753 3.2e-07 58.5 94 40.4
C07p26670 Brassica napus HOM05D002618 ORTHO05D002753 4.2e-07 58.2 79 44.3
Carub.0008s0447 Capsella rubella HOM05D002618 ORTHO05D002753 4.2e-07 58.2 103 35.0
Ciclev10006128m.g Citrus clementina HOM05D002618 ORTHO05D002753 4.2e-07 58.2 94 43.6
MELO3C023015.2 Cucumis melo HOM05D002618 ORTHO05D002753 4.2e-07 58.2 88 42.0
Cpa.g.sc165.38 Carica papaya HOM05D002618 ORTHO05D002753 5.5e-07 57.8 80 46.2
CsaV3_2G012620 Cucumis sativus L. HOM05D002618 ORTHO05D002753 5.5e-07 57.8 88 43.2
FAN22G1431 Fragaria x ananassa HOM05D002618 ORTHO05D002753 5.5e-07 57.8 103 41.7
unitig_748.g7332 Utricularia gibba HOM05D002618 ORTHO05D002753 5.5e-07 57.8 99 45.5
Aa31LG5G3220 Aethionema arabicum HOM05D002618 ORTHO05D002753 7.2e-07 57.4 49 55.1
FAN17G1637 Fragaria x ananassa HOM05D002618 ORTHO05D002753 7.2e-07 57.4 103 42.7
Psat6g124760 Pisum sativum HOM05D002618 ORTHO05D002753 7.2e-07 57.4 68 52.9
SHI26677 Sapria himalayana HOM05D002618 ORTHO05D002753 7.2e-07 57.4 90 41.1
Sp2g08880 Schrenkiella parvula HOM05D002618 ORTHO05D002753 7.2e-07 57.4 49 57.1
TPR.G33676 Trifolium pratense HOM05D002529 ORTHO05D002664 7.2e-07 57.4 59 49.2
Duzib133G0289 Durio zibethinus HOM05D002618 ORTHO05D002753 9.4e-07 57.0 82 45.1
FvH4_4g04100 Fragaria vesca HOM05D002618 ORTHO05D002753 9.4e-07 57.0 108 42.6
FAN12G2830 Fragaria x ananassa HOM05D002618 ORTHO05D002753 9.4e-07 57.0 108 42.6
Manes.13G036900 Manihot esculenta HOM05D002618 ORTHO05D002753 9.4e-07 57.0 85 48.2
Prupe.8G219100 Prunus persica HOM05D002618 ORTHO05D002753 9.4e-07 57.0 34 73.5
VMungo0720G0981 Vigna mungo HOM05D002618 ORTHO05D002753 9.4e-07 57.0 100 43.0
AT5G44060 Arabidopsis thaliana HOM05D002618 ORTHO05D002753 1.2e-06 56.6 101 40.6
Lsat_1_v5_gn_1_75101 Lactuca sativa HOM05D002618 ORTHO05D002753 1.2e-06 56.6 95 44.2
Sc13g0005870 Simmondsia chinensis HOM05D002618 ORTHO05D002753 1.2e-06 56.6 96 45.8
THA.LOC104801139 Tarenaya hassleriana HOM05D002618 ORTHO05D002753 1.2e-06 56.6 102 40.2
BraA06t27619Z Brassica rapa HOM05D002618 ORTHO05D002753 1.6e-06 56.2 81 44.4
AL8G16010 Arabidopsis lyrata HOM05D002618 ORTHO05D002753 2.1e-06 55.8 49 53.1
QL09p040454 Quercus lobata HOM05D002618 ORTHO05D002753 2.1e-06 55.8 74 45.9
Thhalv10003283m.g Eutrema salsugineum HOM05D002618 ORTHO05D002753 2.7e-06 55.5 68 47.1
Thhalv10010011m.g Eutrema salsugineum HOM05D002618 ORTHO05D002753 2.7e-06 55.5 98 36.7
Glyma.13G125500 Glycine max HOM05D002618 ORTHO05D002753 2.7e-06 55.5 82 41.5
Gohir.D11G138300 Gossypium hirsutum HOM05D002618 ORTHO05D002753 2.7e-06 55.5 90 40.0
Gorai.007G148300 Gossypium raimondii HOM05D002618 ORTHO05D002753 2.7e-06 55.5 90 40.0
TPR.G21897 Trifolium pratense HOM05D002618 ORTHO05D002753 2.7e-06 55.5 84 41.7
AT1G04000 Arabidopsis thaliana HOM05D002618 ORTHO05D002753 4.7e-06 54.7 94 37.2
Lj5g0018655 Lotus japonicus HOM05D002618 ORTHO05D002753 4.7e-06 54.7 122 35.2
QL09p040480 Quercus lobata HOM05D002618 ORTHO05D002753 4.7e-06 54.7 32 71.9
A09p68090 Brassica napus HOM05D002618 ORTHO05D002753 8.0e-06 53.9 94 38.3
CARHR003350 Cardamine hirsuta HOM05D002618 ORTHO05D002753 8.0e-06 53.9 103 37.9
Glyma.10G183600 Glycine max HOM05D002618 ORTHO05D002753 8.0e-06 53.9 95 43.2
Glyma.20G206700 Glycine max HOM05D002618 ORTHO05D002753 8.0e-06 53.9 78 52.6
Gohir.A11G132200 Gossypium hirsutum HOM05D002618 ORTHO05D002753 8.0e-06 53.9 83 45.8
Lalb_Chr02g0152661 Lupinus albus HOM05D002618 ORTHO05D002753 8.0e-06 53.9 81 42.0


User provided reference genes

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