Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 0.0e+00 1993.4 1084 100.0
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 0.0e+00 1522.3 1147 76.5
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1180.6 1113 61.3
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1161.0 1105 60.4
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1131.3 1112 59.4
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1125.2 1116 58.1
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 9.6e-310 1067.0 1074 56.6
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 5.7e-278 961.4 1117 52.0
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.6e-272 943.3 1125 51.4
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 8.8e-271 937.6 1147 50.9
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.5e-270 936.0 1147 50.7
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.4e-268 929.5 1105 50.6
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 4.5e-267 925.2 1106 51.8
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 4.7e-264 915.2 1110 51.2
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.5e-262 910.2 1111 50.0
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 4.8e-261 905.2 722 66.3
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 4.1e-260 902.1 1112 49.3
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 5.0e-258 895.2 1118 48.7
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.4e-257 893.6 1102 50.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.4e-257 893.6 1107 49.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 4.2e-257 892.1 811 59.4
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 5.5e-257 891.7 1108 49.4
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.6e-256 890.2 1114 49.7
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 2.1e-256 889.8 1069 50.6
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.8e-255 886.7 1136 48.2
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.3e-255 886.3 1106 49.4
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 2.0e-254 883.2 1155 47.2
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 2.6e-254 882.9 1128 48.6
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.3e-254 882.5 1098 49.5
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 4.4e-254 882.1 1094 49.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 2.8e-253 879.4 1133 47.7
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 4.8e-253 878.6 859 56.9
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.8e-252 876.7 1078 49.4
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.0e-250 870.9 833 58.6
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.3e-250 870.5 1150 46.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.9e-250 869.4 1107 50.0
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 8.5e-250 867.8 1114 49.2
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 6.7e-247 858.2 1107 48.5
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.5e-246 857.1 1107 48.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.0e-246 856.7 1103 48.7
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.3e-246 855.9 757 61.8
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 4.4e-246 855.5 1119 48.3
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 7.5e-246 854.7 1113 48.2
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.7e-246 854.4 751 61.1
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 9.7e-246 854.4 1104 48.4
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 4.8e-245 852.0 751 61.1
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.4e-244 849.7 1121 48.3
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 2.4e-244 849.7 1107 48.9
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 5.3e-244 848.6 1123 48.4
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 7.0e-244 848.2 822 56.9
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 9.1e-244 847.8 1109 48.8
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.0e-243 846.7 1145 47.1
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.5e-243 845.9 1097 48.4
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.9e-243 845.1 829 56.2
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 3.8e-242 842.4 1099 47.4
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 4.2e-241 839.0 1128 47.9
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 4.0e-239 832.4 1122 48.3
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 8.8e-239 831.2 1102 48.1
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 7.5e-238 828.2 1111 47.0
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 7.5e-238 828.2 1245 43.4
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 6.3e-237 825.1 1109 47.0
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.4e-236 823.2 1049 49.2
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 7.0e-236 821.6 1146 45.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 9.1e-236 821.2 1084 47.1
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.7e-235 819.7 799 57.7
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.0e-234 817.8 1107 47.2
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.5e-233 812.0 1099 46.5
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 4.7e-232 808.9 750 59.5
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.8e-231 807.0 717 59.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 5.2e-231 805.4 1101 47.4
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 6.8e-231 805.1 850 53.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.2e-230 804.3 793 56.2
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 5.7e-230 802.0 1104 46.2
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 5.7e-230 802.0 1100 47.0
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.5e-230 801.6 1098 45.7
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.7e-229 799.3 717 59.0
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 4.9e-229 798.9 755 57.6
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 4.1e-228 795.8 751 57.4
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.3e-226 790.8 1105 47.2
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.3e-226 790.0 1078 46.6
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 2.3e-226 790.0 1113 46.0
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 8.6e-226 788.1 838 52.6
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.6e-225 785.4 826 52.9
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 9.5e-225 784.6 828 53.5
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 3.6e-224 782.7 1114 46.2
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.8e-223 780.4 756 57.4
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.1e-223 779.6 1103 45.3
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 5.2e-223 778.9 820 52.4
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 5.2e-223 778.9 1108 45.7
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.2e-221 773.5 748 56.1
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 3.7e-221 772.7 675 62.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.0e-218 764.6 707 60.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 9.5e-217 758.1 674 60.1
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.2e-216 757.7 1112 44.8
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.6e-216 756.1 777 55.3
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 2.2e-213 746.9 825 52.1
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 8.3e-213 745.0 1116 44.4
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 5.4e-212 742.3 726 55.9
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 3.0e-210 736.5 683 58.9
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.5e-209 734.2 695 57.1
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.1e-208 730.3 822 50.4
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 4.7e-208 729.2 871 48.9
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.5e-206 724.2 868 48.6
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.3e-205 721.1 702 54.8
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 3.7e-205 719.5 713 56.9
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 8.3e-205 718.4 1091 44.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 3.2e-204 716.5 889 47.7
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 9.2e-204 714.9 699 54.5
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.3e-202 710.3 710 53.7
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 3.0e-202 709.9 759 53.4
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 8.1e-192 675.2 757 51.7
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 2.1e-187 660.6 720 52.4
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 3.0e-186 656.8 692 53.6
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.6e-174 617.1 1117 39.6
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.5e-172 610.5 1124 39.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 3.7e-160 570.1 699 46.5
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 6.1e-155 552.7 700 46.7
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 3.5e-142 510.4 1026 35.2
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.9e-133 480.7 850 40.1
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 6.5e-125 453.0 700 40.9
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 2.3e-101 374.8 567 37.7
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.2e-99 369.0 945 30.5
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 6.2e-99 366.7 800 32.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.1e-98 365.9 310 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.2e-91 342.4 470 41.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.4e-39 166.8 115 69.6
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 4.6e-38 164.5 189 52.9
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.3e-37 162.2 115 68.7
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.4e-26 125.6 383 27.7
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 8.8e-21 107.1 144 43.8
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 5.5e-15 87.8 126 44.4
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 7.2e-15 87.4 126 44.4
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.8e-13 82.8 106 44.3
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.3e-13 82.4 475 28.0
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 5.7e-12 77.8 80 56.2
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 7.5e-12 77.4 106 43.4
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 3.8e-08 65.1 55 61.8


User provided reference genes

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