Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 1.7e-117 426.0 214 100.0
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.9e-28 130.2 215 40.9
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.3e-28 129.0 215 40.5
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 8.9e-26 121.3 214 37.9
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 8.9e-26 121.3 214 37.9
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 5.8e-25 118.6 214 36.9
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 7.5e-25 118.2 211 36.5
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.7e-24 117.1 214 36.9
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 2.2e-24 116.7 214 36.0
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 4.9e-24 115.5 214 36.0
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.9e-23 113.6 214 36.9
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.9e-23 113.6 214 36.9
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 1.9e-23 113.6 214 36.0
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 1.9e-23 113.6 214 35.5
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 2.4e-23 113.2 212 35.8
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 3.2e-23 112.8 214 35.5
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 3.2e-23 112.8 212 36.3
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 5.4e-23 112.1 214 35.0
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 7.1e-23 111.7 214 36.4
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 7.1e-23 111.7 216 36.6
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 7.1e-23 111.7 216 36.6
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 9.2e-23 111.3 214 35.5
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 9.2e-23 111.3 205 36.6
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 1.6e-22 110.5 214 35.0
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.6e-22 110.5 214 35.0
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.1e-22 110.2 204 36.3
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 2.7e-22 109.8 215 35.8
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 3.5e-22 109.4 215 35.3
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 3.5e-22 109.4 214 34.6
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 3.5e-22 109.4 214 34.1
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 4.6e-22 109.0 209 35.4
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 6.0e-22 108.6 214 35.0
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 6.0e-22 108.6 214 35.5
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 6.0e-22 108.6 214 35.0
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 6.0e-22 108.6 216 36.1
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 6.0e-22 108.6 232 34.5
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 7.8e-22 108.2 206 35.9
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 7.8e-22 108.2 206 35.9
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.3e-21 107.5 215 35.3
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.7e-21 107.1 212 34.9
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 1.7e-21 107.1 210 34.8
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 1.7e-21 107.1 209 36.8
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 1.7e-21 107.1 213 34.3
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 3.0e-21 106.3 214 34.1
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 3.0e-21 106.3 214 34.6
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 3.9e-21 105.9 214 33.2
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 5.1e-21 105.5 214 35.5
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 6.6e-21 105.1 196 36.7
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 6.6e-21 105.1 210 34.8
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 8.6e-21 104.8 196 36.7
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.1e-20 104.4 214 35.0
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 1.1e-20 104.4 214 32.2
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 1.9e-20 103.6 206 36.4
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 1.9e-20 103.6 214 32.7
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 1.9e-20 103.6 219 33.8
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.9e-20 103.6 214 34.1
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.5e-20 103.2 211 34.6
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.5e-20 103.2 215 34.0
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 2.5e-20 103.2 214 34.6
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 3.3e-20 102.8 214 33.2
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 3.3e-20 102.8 214 32.2
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 4.3e-20 102.4 214 34.6
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 4.3e-20 102.4 214 34.6
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 4.3e-20 102.4 212 34.0
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 5.6e-20 102.1 202 34.2
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 7.3e-20 101.7 214 32.2
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 7.3e-20 101.7 214 33.6
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 7.3e-20 101.7 204 33.3
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 7.3e-20 101.7 204 33.3
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 9.5e-20 101.3 214 34.1
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.2e-19 100.9 207 35.3
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.6e-19 100.5 214 34.6
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 2.1e-19 100.1 214 34.6
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 2.1e-19 100.1 53 81.1
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 2.8e-19 99.8 214 34.6
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 2.8e-19 99.8 210 32.9
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 2.8e-19 99.8 214 34.1
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 2.8e-19 99.8 248 33.1
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 3.6e-19 99.4 214 34.6
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 3.6e-19 99.4 53 79.2
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 3.6e-19 99.4 207 34.8
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 4.7e-19 99.0 206 34.0
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 4.7e-19 99.0 53 79.2
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 4.7e-19 99.0 214 32.7
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 4.7e-19 99.0 53 79.2
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 6.2e-19 98.6 217 33.2
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 6.2e-19 98.6 214 34.1
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 6.2e-19 98.6 214 34.1
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 6.2e-19 98.6 204 33.3
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 8.1e-19 98.2 214 34.1
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 8.1e-19 98.2 216 33.8
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 8.1e-19 98.2 207 32.4
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 8.1e-19 98.2 53 77.4
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 1.1e-18 97.8 215 33.5
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 1.1e-18 97.8 214 34.1
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.4e-18 97.4 214 33.2
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 1.8e-18 97.1 214 35.0
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 1.8e-18 97.1 214 32.7
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 1.8e-18 97.1 53 75.5
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 1.8e-18 97.1 201 33.8
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 1.8e-18 97.1 53 75.5
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 1.8e-18 97.1 214 33.6
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 3.1e-18 96.3 214 32.7
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 3.1e-18 96.3 204 32.8
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 3.1e-18 96.3 214 32.7
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 4.0e-18 95.9 214 33.6
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 4.0e-18 95.9 53 77.4
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 5.2e-18 95.5 53 75.5
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 6.8e-18 95.1 214 33.6
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 6.8e-18 95.1 214 33.6
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 8.9e-18 94.7 214 33.6
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 8.9e-18 94.7 53 73.6
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 8.9e-18 94.7 202 32.2
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 1.2e-17 94.4 53 75.5
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.5e-17 94.0 46 82.6
AT5G27760 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 2.6e-17 93.2 55 70.9
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 3.4e-17 92.8 53 73.6
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 7.6e-17 91.7 53 73.6
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 9.9e-17 91.3 50 78.0
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 9.9e-17 91.3 53 71.7
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 1.3e-16 90.9 196 32.7
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 1.7e-16 90.5 47 80.9
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 2.9e-16 89.7 51 72.5
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 3.8e-16 89.4 53 71.7
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 3.8e-16 89.4 213 31.0
DCAR_029391 Daucus carota HOM05D002454 ORTHO05D002581 6.4e-16 88.6 51 74.5
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 8.4e-16 88.2 53 71.7
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.1e-15 87.8 214 30.8
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 1.9e-15 87.0 211 29.9
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 1.9e-15 87.0 208 32.2
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 1.9e-15 87.0 45 84.4
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.4e-15 86.7 205 30.2
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 2.4e-15 86.7 205 30.2
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 3.2e-15 86.3 205 30.2
GSVIVG01031131001 Vitis vinifera HOM05D002454 ORTHO05D002581 3.2e-15 86.3 44 84.1
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 4.1e-15 85.9 214 30.4
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 4.6e-14 82.4 44 75.0
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 1.0e-13 81.3 211 30.8
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 6.6e-13 78.6 209 29.7
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 5.6e-12 75.5 45 84.4
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 9.6e-12 74.7 214 26.6
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.6e-12 74.7 214 26.6
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.6e-12 74.7 214 26.6
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 9.6e-12 74.7 214 26.6
CSS0012016 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.2e-11 74.3 42 81.0
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.1e-11 73.6 214 26.6
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 2.1e-11 73.6 214 26.2
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 6.2e-11 72.0 45 68.9
Oeu011231.1 Olea europaea HOM05D002454 ORTHO05D002581 1.1e-10 71.2 69 53.6
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 2.4e-10 70.1 192 28.6
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.4e-10 70.1 189 29.1
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.4e-10 70.1 70 58.6
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 3.1e-10 69.7 43 81.4
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 3.4e-09 66.2 46 78.3
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 4.4e-09 65.9 50 68.0
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 4.4e-09 65.9 45 60.0
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 5.8e-09 65.5 45 73.3
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 5.8e-09 65.5 48 70.8
SEGI_14580 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 7.6e-09 65.1 44 63.6
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 9.9e-09 64.7 46 76.1
SEGI_41397 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 9.9e-09 64.7 48 58.3
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.3e-08 64.3 191 30.4
SEGI_27459 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 1.3e-08 64.3 44 61.4
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 2.9e-08 63.2 191 30.4
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 2.9e-08 63.2 191 30.4
SEGI_13531 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 3.8e-08 62.8 44 61.4
ClCG11G005830 Citrullus lanatus HOM05D002454 ORTHO05D002581 5.4e-07 58.9 45 55.6
CsaV3_6G002150 Cucumis sativus L. HOM05D002454 ORTHO05D002581 2.1e-06 57.0 45 51.1
CDE07G0062 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 2.7e-06 56.6 44 50.0
Prupe.2G260100 Prunus persica HOM05D002454 ORTHO05D002581 2.7e-06 56.6 45 44.4
MELO3C019992.2 Cucumis melo HOM05D002454 ORTHO05D002581 4.6e-06 55.8 45 48.9
Duzib106G0273 Durio zibethinus HOM05D002454 ORTHO05D002581 4.6e-06 55.8 49 46.9
Gohir.D10G188700 Gossypium hirsutum HOM05D002454 ORTHO05D002581 4.6e-06 55.8 48 47.9
Gorai.011G211700 Gossypium raimondii HOM05D002454 ORTHO05D002581 4.6e-06 55.8 48 47.9
MBI15_g26252_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 7.8e-06 55.1 44 45.5
TWI09G0147 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 7.8e-06 55.1 46 52.2


User provided reference genes

Program Settings