Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 1.2e-133 479.9 269 100.0
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 7.4e-70 268.1 271 60.9
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.6e-48 197.2 272 52.9
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.6e-48 197.2 272 52.9
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 7.5e-46 188.3 272 49.6
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 7.5e-46 188.3 272 49.6
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.5e-43 179.5 269 46.8
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 4.0e-39 166.0 142 62.7
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 8.8e-39 164.9 144 62.5
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.9e-33 147.1 151 55.0
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 2.5e-33 146.7 155 50.3
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 1.4e-31 141.0 253 44.7
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.8e-31 140.6 214 44.4
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 4.0e-31 139.4 241 40.2
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 1.5e-30 137.5 149 49.0
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 4.4e-30 136.0 170 44.1
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 6.3e-29 132.1 170 45.3
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 1.1e-28 131.3 148 45.3
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 3.1e-28 129.8 259 37.8
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 1.2e-27 127.9 259 37.5
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.2e-27 127.9 286 40.2
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.2e-27 127.9 284 37.3
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.3e-26 124.4 153 45.8
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 1.3e-26 124.4 262 36.3
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.7e-26 124.0 270 38.5
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 8.6e-26 121.7 158 45.6
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 8.6e-26 121.7 158 45.6
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 9.5e-25 118.2 268 35.1
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 1.6e-24 117.5 271 35.1
DCAR_023352 Daucus carota HOM05D005742 ORTHO05D001888 8.0e-24 115.2 256 35.9
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 1.4e-23 114.4 161 41.0
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 1.8e-23 114.0 293 34.1
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 2.3e-23 113.6 212 37.7
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 3.0e-23 113.2 147 42.9
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 2.0e-22 110.5 150 43.3
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 4.4e-22 109.4 299 32.1
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 5.7e-22 109.0 161 39.1
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 5.7e-22 109.0 308 34.1
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 9.8e-22 108.2 171 38.6
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 2.2e-21 107.1 144 43.1
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 2.9e-21 106.7 165 39.4
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 3.7e-21 106.3 153 41.2
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 3.7e-21 106.3 151 41.1
Gohir.A02G054001 Gossypium hirsutum HOM05D005742 ORTHO05D001888 6.4e-21 105.5 144 41.0
Actinidia13362 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.1e-20 104.8 110 55.5
Actinidia06790 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.2e-20 103.2 77 71.4
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 9.2e-20 101.7 299 35.5
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 1.6e-19 100.9 153 36.6
Migut.N00045 Erythranthe guttata HOM05D005742 ORTHO05D001888 5.9e-19 99.0 148 37.8
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 5.9e-19 99.0 151 39.1
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 7.8e-19 98.6 142 40.8
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.0e-18 98.2 164 41.5
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 1.0e-18 98.2 152 40.1
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 3.0e-18 96.7 269 30.5
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 5.0e-18 95.9 148 39.2
Nitab4.5_0002218g0040 Nicotiana tabacum HOM05D005742 ORTHO05D001888 5.0e-18 95.9 148 38.5
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 6.6e-18 95.5 155 38.7
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 8.6e-18 95.1 294 33.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.5e-17 94.4 148 42.6
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.5e-17 94.4 148 42.6
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 1.9e-17 94.0 146 39.7
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 2.5e-17 93.6 148 41.2
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 3.3e-17 93.2 150 44.7
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 3.3e-17 93.2 151 43.0
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 3.3e-17 93.2 147 42.2
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 3.3e-17 93.2 146 37.0
Sopen01g026080 Solanum pennellii HOM05D005742 ORTHO05D001888 3.3e-17 93.2 168 36.9
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 3.3e-17 93.2 276 33.3
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 4.3e-17 92.8 148 41.9
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 4.3e-17 92.8 148 41.9
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 7.3e-17 92.0 147 42.9
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 9.5e-17 91.7 148 43.2
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 1.2e-16 91.3 148 43.2
Hma1.2p1_0293F.1_g116340 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.1e-16 90.5 156 39.1
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 2.1e-16 90.5 148 36.5
MSTRG.3861 Avicennia marina HOM05D005742 ORTHO05D001888 2.8e-16 90.1 143 36.4
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 3.6e-16 89.7 276 30.4
Glyma.09G036200 Glycine max HOM05D005742 ORTHO05D001888 4.7e-16 89.4 155 35.5
Phvul.006G117500 Phaseolus vulgaris HOM05D005742 ORTHO05D001888 4.7e-16 89.4 149 36.2
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 4.7e-16 89.4 266 32.0
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 6.2e-16 89.0 160 35.0
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 6.2e-16 89.0 223 36.8
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 1.1e-15 88.2 141 37.6
Hma1.2p1_0129F.1_g060190 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.8e-15 87.4 98 52.0
unitig_749.g13364 Utricularia gibba HOM05D005742 ORTHO05D001888 2.3e-15 87.0 149 39.6
VMungo0540G2083 Vigna mungo HOM05D005742 ORTHO05D001888 2.3e-15 87.0 157 33.8
Hma1.2p1_0400F.1_g144500 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.1e-15 86.7 98 51.0
Ca_01851_v3 Cicer arietinum L. HOM05D005742 ORTHO05D001888 5.2e-15 85.9 160 32.5
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 5.2e-15 85.9 250 35.2
SGA_v2.0_scaffold104G30095 Striga asiatica HOM05D005742 ORTHO05D001888 6.8e-15 85.5 124 42.7
Lalb_Chr20g0120901 Lupinus albus HOM05D005742 ORTHO05D001888 1.2e-14 84.7 146 34.2
Peaxi162Scf00228g00024 Petunia axillaris HOM05D005742 ORTHO05D001888 1.2e-14 84.7 145 33.8
Psat1g160600 Pisum sativum HOM05D005742 ORTHO05D001888 1.5e-14 84.3 146 34.2
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 2.0e-14 84.0 148 35.1
Lalb_Chr18g0058731 Lupinus albus HOM05D005742 ORTHO05D001888 2.6e-14 83.6 146 30.1
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 2.6e-14 83.6 157 35.0
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 4.4e-14 82.8 260 33.1
COL.COLO4_34630 Corchorus olitorius HOM05D005742 ORTHO05D001888 7.5e-14 82.0 154 34.4
Hma1.2p1_0375F.1_g139000 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 7.5e-14 82.0 98 50.0
Hma1.2p1_0419F.1_g149380 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 7.5e-14 82.0 98 49.0
VMungo0540G0961 Vigna mungo HOM05D005742 ORTHO05D001888 7.5e-14 82.0 150 33.3
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 1.7e-13 80.9 147 32.7
Duzib138G0624 Durio zibethinus HOM05D008182 ORTHO05D001888 2.9e-13 80.1 145 33.1
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 2.9e-13 80.1 148 38.5
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 3.7e-13 79.7 273 30.4
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 1.1e-12 78.2 259 25.5
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 1.1e-12 78.2 147 32.0
PSO170G5750 Papaver somniferum HOM05D005742 ORTHO05D001888 1.4e-12 77.8 157 29.9
Lj6g0008349 Lotus japonicus HOM05D005742 ORTHO05D001888 1.9e-12 77.4 146 32.2
Hma1.2p1_0170F.1_g075030 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 2.4e-12 77.0 92 48.9
PSO357G0458 Papaver somniferum HOM05D005742 ORTHO05D001888 3.2e-12 76.6 157 28.7
COL.COLO4_23220 Corchorus olitorius HOM05D008182 ORTHO05D001888 9.2e-12 75.1 145 30.3
Thecc.01G314800 Theobroma cacao HOM05D008182 ORTHO05D001888 1.2e-11 74.7 145 32.4
TWI36G1295 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 1.2e-11 74.7 122 37.7
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 3.5e-11 73.2 173 30.6
Lsat_1_v5_gn_1_41021 Lactuca sativa HOM05D005742 ORTHO05D001888 6.0e-11 72.4 132 34.1
Gohir.A11G108700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 7.8e-11 72.0 145 29.7
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 7.8e-11 72.0 232 32.3
Carub.0001s0161 Capsella rubella HOM05D008182 ORTHO05D001888 1.0e-10 71.6 169 30.8
Duzib211G0330 Durio zibethinus HOM05D008182 ORTHO05D001888 1.3e-10 71.2 226 27.0
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 1.3e-10 71.2 166 27.7
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.7e-10 70.9 143 33.6
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 1.7e-10 70.9 183 26.2
Lalb_Chr15g0089231 Lupinus albus HOM05D005742 ORTHO05D001888 1.7e-10 70.9 160 30.6
CARHR001860 Cardamine hirsuta HOM05D008182 ORTHO05D001888 5.0e-10 69.3 149 30.2
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 5.0e-10 69.3 145 35.2
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 6.6e-10 68.9 149 27.5
FAN07G2165 Fragaria x ananassa HOM05D005742 ORTHO05D001888 8.6e-10 68.6 79 48.1
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 1.1e-09 68.2 173 29.5
arahy.Tifrunner.gnm1.ann1.X5UH65 Arachis hypogaea HOM05D005742 ORTHO05D001888 2.5e-09 67.0 161 31.1
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 2.5e-09 67.0 148 37.2
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 2.5e-09 67.0 151 29.8
Os12g0561500 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 2.5e-09 67.0 146 33.6
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 5.6e-09 65.9 142 32.4
Lalb_Chr15g0089211 Lupinus albus HOM05D005742 ORTHO05D001888 7.3e-09 65.5 160 28.8
Lalb_Chr15g0089221 Lupinus albus HOM05D005742 ORTHO05D001888 7.3e-09 65.5 160 28.8
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 1.2e-08 64.7 140 31.4
Sabra02G0161800 Salix brachista HOM05D008182 ORTHO05D001888 1.2e-08 64.7 276 27.2
Lalb_Chr18g0058721 Lupinus albus HOM05D005742 ORTHO05D001888 1.6e-08 64.3 144 29.2
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 2.1e-08 63.9 150 30.7
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.8e-08 63.5 145 29.7
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 2.8e-08 63.5 142 32.4
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.6e-08 63.2 142 29.6
PGR031G3690 Punica granatum HOM05D005742 ORTHO05D001888 3.6e-08 63.2 151 33.1
ClCG10G003050 Citrullus lanatus HOM05D000281 ORTHO05D000290 4.7e-08 62.8 158 30.4
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 6.2e-08 62.4 142 29.6
QL12p019526 Quercus lobata HOM05D005742 ORTHO05D001888 8.1e-08 62.0 281 30.2
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 8.1e-08 62.0 156 28.2
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 1.1e-07 61.6 149 27.5
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.4e-07 61.2 143 30.1
Manes.04G123800 Manihot esculenta HOM05D008182 ORTHO05D001888 1.4e-07 61.2 116 29.3
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 2.3e-07 60.5 172 26.2
Cpa.g.sc18.59 Carica papaya HOM05D008182 ORTHO05D001888 4.0e-07 59.7 188 27.1
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 5.2e-07 59.3 144 31.2
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 6.8e-07 58.9 159 30.2
Hma1.2p1_0178F.1_g078280 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 6.8e-07 58.9 61 57.4
Hma1.2p1_0178F.1_g078313 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 6.8e-07 58.9 61 57.4
Potri.014G119400 Populus trichocarpa HOM05D008182 ORTHO05D001888 8.9e-07 58.5 155 25.2
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 8.9e-07 58.5 142 31.7
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.2e-06 58.2 140 30.0
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 1.2e-06 58.2 163 30.7
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 2.0e-06 57.4 147 32.0
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 3.4e-06 56.6 150 25.3
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 4.4e-06 56.2 141 28.4
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 5.8e-06 55.8 164 26.2
Gohir.A08G119600 Gossypium hirsutum HOM05D008182 ORTHO05D001888 7.5e-06 55.5 145 25.5
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 7.5e-06 55.5 146 28.8
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 9.9e-06 55.1 143 28.0
Gohir.D09G226500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 9.9e-06 55.1 151 24.5


User provided reference genes

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