Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.1e-277 958.4 466 100.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.1e-257 892.9 439 98.9
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.5e-231 803.5 439 86.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 5.2e-220 767.7 437 83.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.3e-215 753.1 450 80.7
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-214 749.6 439 83.6
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.2e-211 740.0 429 83.9
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.8e-210 735.3 445 78.7
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.8e-210 735.3 439 79.3
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-209 733.4 461 77.0
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.4e-209 733.0 440 80.0
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-209 732.6 440 79.5
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.1e-209 731.9 437 80.1
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 9.1e-209 730.3 439 79.3
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.7e-208 727.2 440 79.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.2e-207 725.7 439 79.7
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 8.5e-207 723.8 445 78.0
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 8.5e-207 723.8 439 79.7
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.5e-206 722.2 439 78.8
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.5e-206 721.1 439 78.6
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.2e-205 719.9 439 77.9
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.6e-205 719.5 448 77.0
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.6e-205 718.4 445 77.5
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 8.0e-205 717.2 444 77.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.0e-204 716.8 439 78.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.8e-204 716.1 440 76.1
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.8e-204 716.1 439 78.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.0e-204 714.9 445 75.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.0e-204 714.9 439 77.9
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 5.2e-204 714.5 465 72.9
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 5.2e-204 714.5 445 77.3
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 6.8e-204 714.1 439 77.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.2e-203 713.4 439 77.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.2e-203 713.4 439 77.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 2.0e-203 712.6 439 77.4
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.4e-203 711.8 446 76.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 9.8e-203 710.3 439 77.4
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 9.8e-203 710.3 445 76.9
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.2e-202 709.1 439 78.1
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.7e-202 708.4 439 77.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.1e-201 706.8 439 76.3
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.8e-201 706.1 444 76.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.1e-201 705.3 439 77.0
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 4.1e-201 704.9 440 77.0
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 9.1e-201 703.7 440 77.0
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 9.1e-201 703.7 439 77.7
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 7.7e-200 700.7 424 79.5
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.0e-199 700.3 440 77.0
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.0e-199 700.3 430 77.9
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.7e-199 699.5 439 76.8
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 5.0e-199 698.0 440 76.1
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.6e-199 697.6 449 73.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.1e-198 696.8 439 74.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.6e-197 691.8 439 75.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 4.7e-197 691.4 440 75.0
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 4.4e-195 684.9 440 74.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.7e-194 682.9 439 74.3
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.2e-193 678.7 439 73.3
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.6e-192 676.4 439 73.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.7e-192 675.6 439 72.4
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 5.9e-192 674.5 439 73.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 7.8e-192 674.1 439 73.3
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.6e-191 671.0 448 73.0
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.3e-190 668.7 439 75.2
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.3e-190 668.3 440 74.1
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.8e-189 665.6 422 74.6
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 3.1e-188 662.1 446 71.3
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 8.9e-188 660.6 397 79.1
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.5e-187 659.8 440 73.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.5e-187 659.8 449 71.9
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.4e-187 658.3 439 73.3
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 2.2e-186 656.0 437 73.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.9e-185 652.9 439 72.9
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.6e-184 648.3 439 73.3
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 8.6e-183 644.0 437 70.3
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-182 643.7 446 72.0
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 3.3e-182 642.1 441 72.6
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.6e-181 639.8 439 72.0
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 6.2e-181 637.9 446 72.2
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.4e-180 636.7 411 74.9
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.8e-180 636.3 446 71.3
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.1e-180 635.6 472 66.7
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 4.0e-180 635.2 445 71.2
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.8e-180 634.4 439 72.0
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.6e-179 632.5 446 71.5
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 9.8e-179 630.6 442 75.1
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.7e-178 629.8 445 69.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.2e-178 629.4 439 71.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.2e-178 629.4 439 69.5
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 3.7e-178 628.6 439 71.8
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 4.9e-178 628.2 440 72.0
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 8.3e-178 627.5 439 70.6
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.1e-177 627.1 439 72.2
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.4e-177 626.7 439 71.5
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.4e-177 624.8 483 63.1
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 7.1e-177 624.4 446 70.4
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 7.1e-177 624.4 446 70.4
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 3.5e-176 622.1 439 71.1
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.0e-175 620.5 446 70.4
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.3e-174 615.1 465 66.2
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 2.1e-173 612.8 449 69.3
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 6.2e-173 611.3 441 66.9
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 6.2e-173 611.3 439 66.3
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.8e-172 609.8 397 73.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.7e-170 603.2 439 66.3
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.9e-170 602.4 363 77.7
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.2e-169 597.4 439 68.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-165 585.9 350 79.7
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 3.2e-161 572.4 441 67.3
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.1e-157 557.8 361 75.1
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.1e-156 555.8 453 61.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.9e-156 554.7 357 73.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 6.0e-152 541.6 467 59.3
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 7.3e-150 534.6 487 57.3
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.4e-145 518.5 439 62.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.3e-145 517.7 439 62.2
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.6e-139 499.6 438 57.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.0e-127 459.5 239 94.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.0e-123 446.8 521 46.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.9e-121 440.3 441 51.5
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.6e-120 436.0 327 71.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 6.1e-112 408.7 305 64.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-111 407.5 439 51.9
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.1e-105 387.9 241 73.9
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.6e-96 356.3 287 68.3
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.0e-87 328.2 382 45.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-85 321.2 248 68.5
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.2e-85 320.5 199 75.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 4.1e-84 316.2 448 42.0
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.9e-74 283.1 272 51.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 6.8e-71 272.3 244 59.0
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-68 264.6 453 35.3
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.9e-60 237.7 295 48.5
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.2e-59 235.0 434 37.6
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 4.6e-59 233.0 484 33.7
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.1e-58 229.6 174 67.2
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 6.8e-55 219.2 400 36.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.4e-54 216.9 206 52.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.6e-54 215.7 181 59.1
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.4e-52 209.5 111 85.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.2e-51 208.4 198 51.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.0e-51 206.1 111 83.8
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.3e-50 204.1 111 82.9
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 6.2e-48 196.1 205 54.1
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.2e-44 183.7 340 37.1
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-42 178.7 111 75.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 8.7e-42 175.6 124 65.3
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.3e-41 173.3 105 78.1
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 2.3e-34 151.0 122 56.6
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 6.2e-32 142.9 92 68.5
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.4e-31 141.0 104 63.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 8.4e-29 132.5 67 95.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 7.4e-25 119.4 125 56.8
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.8e-24 117.5 78 70.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 3.5e-19 100.5 58 79.3
vmacro11217 Vaccinium macrocarpon HOM05D004406 ORTHO05D426987 7.9e-11 72.8 96 47.9
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 2.4e-07 61.2 45 60.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 5.3e-07 60.1 35 71.4


User provided reference genes

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