Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15117 Vaccinium macrocarpon HOM05D004995 ORTHO05D006034 1.0e-229 799.7 383 100.0
Rhsim01G0290000 Rhododendron simsii HOM05D004995 ORTHO05D006034 1.6e-198 696.0 385 88.1
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 1.5e-185 652.9 385 81.6
CSS0035665 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 7.1e-183 644.0 386 80.8
CSS0012776 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 7.8e-182 640.6 386 80.6
Dinv10081 Davidia involucrata HOM05D004995 ORTHO05D006034 1.7e-176 622.9 384 77.6
GSVIVG01028102001 Vitis vinifera HOM05D004995 ORTHO05D006034 1.7e-165 586.3 384 72.9
Actinidia21007 Actinidia chinensis HOM05D004995 ORTHO05D006034 5.6e-164 581.3 343 82.5
CiPaw.07G116000 Carya illinoinensis HOM05D004995 ORTHO05D006034 1.4e-162 576.6 386 72.0
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 1.3e-160 570.1 379 72.3
Lj5g0006877 Lotus japonicus HOM05D004995 ORTHO05D006034 2.4e-159 565.8 385 70.1
Prupe.8G270500 Prunus persica HOM05D004995 ORTHO05D006034 9.3e-159 563.9 378 72.0
Manes.01G226600 Manihot esculenta HOM05D004995 ORTHO05D006034 1.6e-158 563.1 380 70.0
QL12p020317 Quercus lobata HOM05D004995 ORTHO05D006034 1.6e-158 563.1 387 69.0
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 1.6e-158 563.1 390 70.5
Cc02_g27310 Coffea canephora HOM05D004995 ORTHO05D006034 2.7e-158 562.4 385 70.6
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 1.3e-157 560.1 381 70.3
Duzib138G1673 Durio zibethinus HOM05D004995 ORTHO05D006034 5.1e-157 558.1 327 78.3
Oeu047387.1 Olea europaea HOM05D004995 ORTHO05D006034 1.9e-156 556.2 384 70.6
Glyma.02G013500 Glycine max HOM05D004995 ORTHO05D006034 2.5e-156 555.8 371 70.1
RcHm_v2.0_Chr7g0241761 Rosa chinensis HOM05D004995 ORTHO05D006034 5.6e-156 554.7 387 68.5
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.6e-155 553.1 383 67.9
FvH4_5g39450 Fragaria vesca HOM05D004995 ORTHO05D006034 2.1e-155 552.7 383 67.9
FAN04G1561 Fragaria x ananassa HOM05D004995 ORTHO05D006034 4.8e-155 551.6 383 67.1
Cpa.g.sc18.23 Carica papaya HOM05D004995 ORTHO05D006034 6.2e-155 551.2 387 67.4
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 1.1e-154 550.4 362 72.1
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 2.4e-154 549.3 374 69.3
Dinv33107 Davidia involucrata HOM05D004995 ORTHO05D006034 5.3e-154 548.1 340 79.1
FAN13G2181 Fragaria x ananassa HOM05D004995 ORTHO05D006034 5.3e-154 548.1 383 67.6
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 9.0e-154 547.4 376 68.4
EL10As5g23507 Beta vulgaris HOM05D004995 ORTHO05D006034 3.4e-153 545.4 328 75.9
Ciclev10024590m.g Citrus clementina HOM05D004995 ORTHO05D006034 5.8e-153 544.7 363 71.9
MBI18_g28452_MAGBIO Magnolia biondii HOM05D004995 ORTHO05D006034 7.6e-153 544.3 387 67.4
MELO3C015934.2 Cucumis melo HOM05D004995 ORTHO05D006034 1.7e-152 543.1 379 67.0
HanXRQChr06g0167831 Helianthus annuus HOM05D004995 ORTHO05D006034 1.7e-152 543.1 323 75.9
Phvul.007G215300 Phaseolus vulgaris HOM05D004995 ORTHO05D006034 2.2e-152 542.7 378 67.7
CsaV3_7G029870 Cucumis sativus L. HOM05D004995 ORTHO05D006034 2.9e-152 542.3 379 67.0
AUR62024673 Chenopodium quinoa HOM05D004995 ORTHO05D006034 1.1e-151 540.4 307 78.8
Sc24g0003210 Simmondsia chinensis HOM05D004995 ORTHO05D006034 1.1e-151 540.4 323 76.8
Medtr1g087290 Medicago truncatula HOM05D004995 ORTHO05D006034 7.1e-151 537.7 386 67.1
Potri.014G122400 Populus trichocarpa HOM05D004995 ORTHO05D006034 7.1e-151 537.7 379 67.5
Ca_10292_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 9.3e-151 537.3 386 65.0
Ca_30263_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 9.3e-151 537.3 386 65.0
HanXRQChr15g0464181 Helianthus annuus HOM05D004995 ORTHO05D006034 9.3e-151 537.3 374 66.8
MD03G1296700 Malus domestica HOM05D004995 ORTHO05D006034 9.3e-151 537.3 389 67.9
SGA_v2.0_scaffold376G50269 Striga asiatica HOM05D004995 ORTHO05D006034 9.3e-151 537.3 375 67.2
Ah.11g049350 Amaranthus hybridus HOM05D004995 ORTHO05D006034 1.2e-150 537.0 340 72.6
AUR62011830 Chenopodium quinoa HOM05D004995 ORTHO05D006034 2.7e-150 535.8 358 69.0
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 1.0e-149 533.9 376 66.0
Sabra14G0090800 Salix brachista HOM05D004995 ORTHO05D006034 1.5e-148 530.0 378 66.4
ECA236G3500 Erigeron canadensis HOM05D004995 ORTHO05D006034 1.9e-148 529.6 383 66.3
TWI75G0138 Tripterygium wilfordii HOM05D004995 ORTHO05D006034 1.9e-148 529.6 388 64.4
Gohir.A12G126200 Gossypium hirsutum HOM05D004995 ORTHO05D006034 2.5e-148 529.3 350 69.4
Hund09619 Selenicereus undatus HOM05D004995 ORTHO05D006034 3.3e-148 528.9 323 73.4
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 9.6e-148 527.3 328 74.7
Sabra02G0160100 Salix brachista HOM05D004995 ORTHO05D006034 1.3e-147 526.9 378 67.7
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 2.1e-147 526.2 384 66.1
Potri.002G197400 Populus trichocarpa HOM05D004995 ORTHO05D006034 2.1e-147 526.2 378 66.7
CANSAT25G2589 Cannabis sativa HOM05D004995 ORTHO05D006034 2.8e-147 525.8 324 75.0
VMungo0720G1458 Vigna mungo HOM05D004995 ORTHO05D006034 2.8e-147 525.8 378 65.3
Peaxi162Scf00058g03010 Petunia axillaris HOM05D004995 ORTHO05D006034 3.7e-147 525.4 384 66.9
Psat6g162360 Pisum sativum HOM05D004995 ORTHO05D006034 3.7e-147 525.4 380 65.3
Migut.D00092 Erythranthe guttata HOM05D004995 ORTHO05D006034 6.2e-147 524.6 379 66.5
Lsat_1_v5_gn_8_165441 Lactuca sativa HOM05D004995 ORTHO05D006034 6.2e-147 524.6 383 66.6
Nitab4.5_0000363g0330 Nicotiana tabacum HOM05D004995 ORTHO05D006034 8.2e-147 524.2 382 66.8
Gohir.D12G129700 Gossypium hirsutum HOM05D004995 ORTHO05D006034 1.1e-146 523.9 356 67.7
Sed0026389 Sechium edule HOM05D004995 ORTHO05D006034 1.8e-146 523.1 378 64.8
Gorai.008G140900 Gossypium raimondii HOM05D004995 ORTHO05D006034 2.4e-146 522.7 356 68.0
Nitab4.5_0006144g0040 Nicotiana tabacum HOM05D004995 ORTHO05D006034 2.4e-146 522.7 382 67.3
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 2.4e-146 522.7 377 65.8
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 9.0e-146 520.8 374 65.0
CAN.G1280.22 Capsicum annuum HOM05D004995 ORTHO05D006034 1.2e-145 520.4 383 65.0
MD11G1316200 Malus domestica HOM05D004995 ORTHO05D006034 1.5e-145 520.0 382 66.8
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 2.9e-144 515.8 398 64.8
PSO357G0286 Papaver somniferum HOM05D004995 ORTHO05D006034 1.1e-143 513.8 351 67.0
PSO170G6821 Papaver somniferum HOM05D004995 ORTHO05D006034 1.4e-143 513.5 347 66.9
DCAR_012367 Daucus carota HOM05D004995 ORTHO05D006034 6.1e-142 508.1 397 63.0
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 3.7e-139 498.8 407 62.4
PGR044G2031 Punica granatum HOM05D004995 ORTHO05D006034 4.8e-139 498.4 383 63.7
unitig_90.g27435 Utricularia gibba HOM05D004995 ORTHO05D006034 3.1e-138 495.7 372 64.2
TPR.G19766 Trifolium pratense HOM05D004995 ORTHO05D006034 3.8e-136 488.8 386 61.9
Lj1A19G23 Lonicera japonica HOM05D004995 ORTHO05D006034 1.1e-135 487.3 325 68.9
DCAR_005771 Daucus carota HOM05D004995 ORTHO05D006034 1.6e-134 483.4 402 59.5
THA.LOC104825943 Tarenaya hassleriana HOM05D004995 ORTHO05D006034 1.8e-133 479.9 370 59.2
ATR0706G147 Amborella trichopoda HOM05D004995 ORTHO05D006034 6.3e-131 471.5 362 61.9
Oeu008461.1 Olea europaea HOM05D004995 ORTHO05D006034 6.3e-131 471.5 300 75.7
CDE09G0507 Ceratophyllum demersum HOM05D004995 ORTHO05D006034 5.9e-129 464.9 372 58.6
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 8.5e-128 461.1 352 59.1
SEGI_38340 Sequoiadendron giganteum HOM05D004995 ORTHO05D006034 6.5e-120 434.9 333 59.5
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 1.0e-117 427.6 386 52.6
Zm00001eb014460 Zea mays HOM05D004995 ORTHO05D006034 7.5e-116 421.4 385 51.9
Peaxi162Scf00001g10213 Petunia axillaris HOM05D004995 ORTHO05D006034 5.9e-113 411.8 294 68.0
Nitab4.5_0001301g0150 Nicotiana tabacum HOM05D004995 ORTHO05D006034 7.7e-113 411.4 291 68.4
Nitab4.5_0013957g0010 Nicotiana tabacum HOM05D004995 ORTHO05D006034 1.0e-112 411.0 306 66.7
PGSC0003DMG400009006 Solanum tuberosum HOM05D004995 ORTHO05D006034 1.5e-111 407.1 295 67.5
CAN.G362.42 Capsicum annuum HOM05D004995 ORTHO05D006034 3.6e-110 402.5 309 64.1
Eucgr.K03537 Eucalyptus grandis HOM05D004995 ORTHO05D006034 1.4e-109 400.6 250 72.8
BcaB01g02426 Brassica carinata HOM05D004995 ORTHO05D006034 5.5e-103 378.6 286 61.5
AL6G51110 Arabidopsis lyrata HOM05D004995 ORTHO05D006034 7.2e-103 378.3 299 59.5
AT4G02110 Arabidopsis thaliana HOM05D004995 ORTHO05D006034 1.2e-102 377.5 291 60.5
FAN08G3258 Fragaria x ananassa HOM05D004995 ORTHO05D006034 1.0e-101 374.4 253 68.4
Sp6g02000 Schrenkiella parvula HOM05D004995 ORTHO05D006034 2.3e-101 373.2 297 59.6
CARHR250290 Cardamine hirsuta HOM05D004995 ORTHO05D006034 4.0e-101 372.5 299 58.2
Carub.0006s3511 Capsella rubella HOM05D004995 ORTHO05D006034 8.8e-101 371.3 275 62.2
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 3.4e-100 369.4 286 59.8
BolC3t16092H Brassica oleracea HOM05D004995 ORTHO05D006034 4.4e-100 369.0 262 63.4
BcaC01g06775 Brassica carinata HOM05D004995 ORTHO05D006034 5.7e-100 368.6 274 62.0
Thhalv10028365m.g Eutrema salsugineum HOM05D004995 ORTHO05D006034 1.3e-99 367.5 234 69.2
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 1.7e-99 367.1 245 65.3
C03p38070 Brassica napus HOM05D004995 ORTHO05D006034 1.4e-98 364.0 262 62.6
HanXRQChr05g0136031 Helianthus annuus HOM05D004995 ORTHO05D006034 9.2e-98 361.3 228 70.2
SHI20082 Sapria himalayana HOM05D004995 ORTHO05D006034 6.1e-94 348.6 237 65.4
TAR633G0044 Trochodendron aralioides HOM05D004995 ORTHO05D006034 1.2e-86 324.3 219 74.4
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 2.0e-84 317.0 310 46.8
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 1.1e-77 294.7 324 45.4
AagrBONN_evm.TU.Sc2ySwM_368.2357 Anthoceros agrestis HOM05D004995 ORTHO05D006034 3.4e-76 289.7 325 43.1
CBR_g29774 Chara braunii HOM05D004995 ORTHO05D006034 4.4e-76 289.3 307 43.0
HPP92_002052 Vanilla planifolia HOM05D004995 ORTHO05D006034 5.6e-71 272.3 189 68.8
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 2.2e-67 260.4 190 64.2
Zm00001eb331400 Zea mays HOM05D004995 ORTHO05D006034 1.1e-55 221.5 192 56.2
TAR633G1331 Trochodendron aralioides HOM05D004995 ORTHO05D006034 5.3e-53 212.6 136 70.6
Aa31LG5G1760 Aethionema arabicum HOM05D004995 ORTHO05D006034 4.8e-30 136.3 133 47.4
CBR_g16825 Chara braunii HOM05D018838 ORTHO05D006034 1.1e-26 125.2 143 42.0
SHI20083 Sapria himalayana HOM05D004995 ORTHO05D006034 3.9e-24 116.7 118 57.6
Os07g0689950 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 1.8e-21 107.8 125 49.6
Zm00001eb333180 Zea mays HOM05D004995 ORTHO05D006034 1.1e-18 98.6 63 65.1
Zm00001eb309400 Zea mays HOM05D004995 ORTHO05D006034 4.2e-18 96.7 63 63.5
MCO11G651 Micromonas commoda HOM05D004995 ORTHO05D007715 6.5e-11 72.8 212 27.8
Cre03.g158464 Chlamydomonas reinhardtii HOM05D004995 ORTHO05D006034 9.4e-10 68.9 297 25.9
AagrBONN_evm.TU.Sc2ySwM_340.1792 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.3e-08 64.3 62 43.5
AagrBONN_evm.TU.Sc2ySwM_340.916 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.3e-08 64.3 57 45.6
AagrBONN_evm.TU.Sc2ySwM_228.1560 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.0e-08 63.9 62 43.5
AagrBONN_evm.TU.Sc2ySwM_368.2961 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.9e-08 63.5 62 43.5
AagrBONN_evm.TU.Sc2ySwM_328.3 Anthoceros agrestis HOM05D000465 ORTHO05D000301 6.7e-08 62.8 56 44.6
CBR_g39265 Chara braunii HOM05D000001 ORTHO05D002182 6.7e-08 62.8 124 29.0
AagrBONN_evm.TU.Sc2ySwM_344.500 Anthoceros agrestis HOM05D000465 ORTHO05D000301 8.8e-08 62.4 63 39.7
AagrBONN_evm.TU.Sc2ySwM_368.3040 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.1e-07 62.0 56 44.6
PSO063G3931 Papaver somniferum HOM05D000001 ORTHO05D002182 1.1e-07 62.0 126 30.2
AagrBONN_evm.TU.Sc2ySwM_228.2568 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.5e-07 61.6 55 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4740 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.5e-07 61.6 55 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2232 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.0e-07 61.2 68 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3725 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.0e-07 61.2 62 41.9
AagrBONN_evm.TU.Sc2ySwM_340.1970 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.6e-07 60.8 62 41.9
AagrBONN_evm.TU.Sc2ySwM_344.3742 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.6e-07 60.8 62 41.9
AagrBONN_evm.TU.Sc2ySwM_368.1853 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.6e-07 60.8 63 42.9
AagrBONN_evm.TU.Sc2ySwM_228.5868 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.3e-07 60.5 55 45.5
BcaC07g36936 Brassica carinata HOM05D000001 ORTHO05D002182 3.3e-07 60.5 125 30.4
AagrBONN_evm.TU.Sc2ySwM_344.3182 Anthoceros agrestis HOM05D000465 ORTHO05D000301 4.4e-07 60.1 56 42.9
PSO782G4898 Papaver somniferum HOM05D000001 ORTHO05D002182 4.4e-07 60.1 122 31.1
Peaxi162Scf01157g00215 Petunia axillaris HOM05D000001 ORTHO05D002182 4.4e-07 60.1 157 28.7
AagrBONN_evm.TU.Sc2ySwM_228.4205 Anthoceros agrestis HOM05D000465 ORTHO05D000301 5.7e-07 59.7 55 45.5
CARHR003370 Cardamine hirsuta HOM05D000001 ORTHO05D002182 5.7e-07 59.7 124 29.8
SMO143G0028 Selaginella moellendorffii HOM05D000001 ORTHO05D002182 5.7e-07 59.7 156 26.9
Zm00001eb077450 Zea mays HOM05D000001 ORTHO05D002182 9.7e-07 58.9 122 30.3
ATR0757G102 Amborella trichopoda HOM05D002415 ORTHO05D002522 1.3e-06 58.5 65 41.5
MD05G1060000 Malus domestica HOM05D000001 ORTHO05D002182 1.7e-06 58.2 214 27.1
Oeu064635.2 Olea europaea HOM05D000001 ORTHO05D002182 1.7e-06 58.2 122 30.3
AagrBONN_evm.TU.Sc2ySwM_340.1039 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.2e-06 57.8 55 43.6
AagrBONN_evm.TU.Sc2ySwM_117.1749 Anthoceros agrestis HOM05D004335 ORTHO05D005328 2.8e-06 57.4 56 42.9
AagrBONN_evm.TU.Sc2ySwM_228.5671 Anthoceros agrestis HOM05D000465 ORTHO05D000301 2.8e-06 57.4 55 43.6
A09p68070 Brassica napus HOM05D000001 ORTHO05D002182 2.8e-06 57.4 157 26.8
ATR0736G050 Amborella trichopoda HOM05D000001 ORTHO05D002182 3.7e-06 57.0 155 29.7
AagrBONN_evm.TU.Sc2ySwM_368.2326 Anthoceros agrestis HOM05D000465 ORTHO05D000301 3.7e-06 57.0 73 39.7
SGA_v2.0_scaffold138G35197 Striga asiatica HOM05D000001 ORTHO05D002182 3.7e-06 57.0 121 28.1
THA.LOC104801137 Tarenaya hassleriana HOM05D000001 ORTHO05D002182 3.7e-06 57.0 151 27.8
AagrBONN_evm.TU.Sc2ySwM_228.3868 Anthoceros agrestis HOM05D000465 ORTHO05D000301 4.8e-06 56.6 55 41.8
AagrBONN_evm.TU.Sc2ySwM_340.2096 Anthoceros agrestis HOM05D000465 ORTHO05D000301 4.8e-06 56.6 55 41.8
Haze_08848 Corylus avellana HOM05D000329 ORTHO05D000833 4.8e-06 56.6 102 34.3
Migut.D00462 Erythranthe guttata HOM05D000001 ORTHO05D002182 4.8e-06 56.6 119 31.9
FAN11G1988 Fragaria x ananassa HOM05D000001 ORTHO05D002182 4.8e-06 56.6 178 27.5
C08p52510 Brassica napus HOM05D000001 ORTHO05D002182 6.3e-06 56.2 190 25.3
BolC8t52778H Brassica oleracea HOM05D000001 ORTHO05D002182 6.3e-06 56.2 190 25.3
FAN25G3090 Fragaria x ananassa HOM05D000001 ORTHO05D002182 6.3e-06 56.2 215 27.0
Lj1C72G5 Lonicera japonica HOM05D000001 ORTHO05D002182 6.3e-06 56.2 175 25.7
BcaC07g42216 Brassica carinata HOM05D000001 ORTHO05D002182 8.2e-06 55.8 130 28.5
CDE06G0038 Ceratophyllum demersum HOM05D000329 ORTHO05D000833 8.2e-06 55.8 88 36.4
FvH4_3g09510 Fragaria vesca HOM05D000001 ORTHO05D002182 8.2e-06 55.8 215 26.5
FAN21G2407 Fragaria x ananassa HOM05D000001 ORTHO05D002182 8.2e-06 55.8 215 26.5


User provided reference genes

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