Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 5.6e-68 260.8 128 100.0
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 5.3e-34 147.9 120 66.7
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.4e-26 122.5 139 54.0
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 2.4e-26 122.5 139 56.8
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-24 116.7 132 53.0
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 6.5e-24 114.4 134 51.5
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.8e-21 106.3 86 59.3
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 2.8e-19 99.0 129 45.7
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 4.8e-19 98.2 142 43.0
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 6.3e-19 97.8 133 40.6
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.1e-18 97.1 124 42.7
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 1.1e-18 97.1 145 43.4
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 5.3e-18 94.7 139 39.6
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 7.0e-18 94.4 88 55.7
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 9.1e-18 94.0 141 42.6
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 2.6e-17 92.4 111 44.1
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.5e-17 92.0 90 48.9
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 3.5e-17 92.0 133 39.8
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 3.5e-17 92.0 132 39.4
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.3e-16 90.1 140 36.4
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.9e-16 89.0 122 42.6
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 2.9e-16 89.0 116 43.1
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.8e-16 88.6 90 47.8
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 5.0e-16 88.2 135 39.3
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 5.0e-16 88.2 102 46.1
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 6.5e-16 87.8 121 44.6
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 8.5e-16 87.4 97 47.4
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 8.5e-16 87.4 96 43.8
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.1e-15 87.0 101 42.6
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.1e-15 87.0 130 37.7
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.9e-15 86.3 128 44.5
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.9e-15 86.3 126 40.5
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.9e-15 86.3 126 40.5
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 2.5e-15 85.9 142 41.5
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 3.2e-15 85.5 129 39.5
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.2e-15 85.5 126 39.7
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.5e-15 84.7 97 47.4
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 5.5e-15 84.7 128 42.2
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 5.5e-15 84.7 125 44.0
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 7.2e-15 84.3 108 46.3
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 7.2e-15 84.3 111 42.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 9.4e-15 84.0 97 45.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 9.4e-15 84.0 107 43.9
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.6e-14 83.2 111 42.3
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.1e-14 82.8 95 47.4
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 2.1e-14 82.8 98 45.9
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.1e-14 82.8 134 43.3
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.7e-14 82.4 96 46.9
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 2.7e-14 82.4 118 43.2
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 6.1e-14 81.3 139 41.0
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.0e-13 80.5 138 39.9
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.4e-13 80.1 88 50.0
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.4e-13 80.1 134 40.3
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.8e-13 79.7 116 39.7
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 1.8e-13 79.7 97 42.3
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 5.2e-13 78.2 99 38.4
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 5.2e-13 78.2 127 46.5
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 8.8e-13 77.4 96 41.7
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 8.8e-13 77.4 120 36.7
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.2e-12 77.0 114 44.7
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.5e-12 76.6 96 41.7
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.0e-12 76.3 140 39.3
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 2.0e-12 76.3 109 43.1
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.6e-12 75.9 121 41.3
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.6e-12 75.9 133 40.6
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.4e-12 75.5 88 46.6
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 3.4e-12 75.5 59 52.5
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 4.4e-12 75.1 134 40.3
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.4e-12 75.1 134 40.3
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.4e-12 75.1 134 40.3
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 4.4e-12 75.1 110 41.8
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.7e-12 74.7 130 40.8
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.7e-12 74.7 130 40.8
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 7.5e-12 74.3 56 62.5
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 9.8e-12 73.9 59 50.8
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-11 73.6 77 44.2
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.7e-11 73.2 125 40.0
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.7e-11 73.2 128 38.3
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.2e-11 72.8 106 42.5
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.2e-11 72.8 115 40.0
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 3.7e-11 72.0 149 36.2
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 4.8e-11 71.6 69 46.4
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 4.8e-11 71.6 69 46.4
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 8.3e-11 70.9 115 40.0
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 8.3e-11 70.9 90 40.0
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 8.3e-11 70.9 90 40.0
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 8.3e-11 70.9 75 52.0
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 8.3e-11 70.9 75 48.0
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.1e-10 70.5 88 42.0
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.1e-10 70.5 81 48.1
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.1e-10 70.5 69 46.4
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.4e-10 70.1 111 46.8
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.4e-10 70.1 114 39.5
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 1.8e-10 69.7 89 40.4
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.8e-10 69.7 120 39.2
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 2.4e-10 69.3 78 44.9
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 2.4e-10 69.3 90 40.0
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 2.4e-10 69.3 90 40.0
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.4e-10 69.3 68 47.1
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 3.1e-10 68.9 123 39.8
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 3.1e-10 68.9 69 46.4
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 4.1e-10 68.6 85 44.7
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 5.4e-10 68.2 63 49.2
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 7.0e-10 67.8 94 42.6
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 7.0e-10 67.8 112 44.6
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 7.0e-10 67.8 111 45.9
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 9.1e-10 67.4 71 49.3
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 9.1e-10 67.4 101 39.6
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 9.1e-10 67.4 81 45.7
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 9.1e-10 67.4 103 40.8
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 9.1e-10 67.4 110 40.9
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.2e-09 67.0 100 38.0
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.2e-09 67.0 87 47.1
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.6e-09 66.6 81 46.9
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.6e-09 66.6 81 46.9
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.6e-09 66.6 81 46.9
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 2.7e-09 65.9 61 54.1
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 3.5e-09 65.5 68 47.1
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 3.5e-09 65.5 81 46.9
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 4.5e-09 65.1 86 44.2
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 5.9e-09 64.7 119 33.6
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 7.7e-09 64.3 100 42.0
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.0e-08 63.9 98 39.8
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 1.3e-08 63.5 37 64.9
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 1.3e-08 63.5 86 39.5
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.2e-08 62.8 81 44.4
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 2.9e-08 62.4 59 47.5
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 5.0e-08 61.6 42 59.5
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 6.5e-08 61.2 130 38.5
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 8.5e-08 60.8 44 61.4
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 8.5e-08 60.8 52 53.8
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.5e-07 59.3 58 46.6
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.5e-07 59.3 76 39.5
CSS0037124 Camellia sinensis var. sinensis HOM05D005200 ORTHO05D005760 4.2e-07 58.5 66 47.0
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 7.2e-07 57.8 30 73.3
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.2e-06 57.0 36 55.6
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 1.6e-06 56.6 59 42.4
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.6e-06 56.6 44 50.0
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 4.7e-06 55.1 36 58.3
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 6.1e-06 54.7 29 69.0
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 6.1e-06 54.7 50 46.0
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 8.0e-06 54.3 88 38.6


User provided reference genes

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