Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15052 Vaccinium macrocarpon HOM05D001775 ORTHO05D008700 6.9e-40 166.8 80 100.0
AUR62040187 Chenopodium quinoa HOM05D001775 ORTHO05D008700 2.8e-09 65.1 31 93.5
Thhalv10021451m.g Eutrema salsugineum HOM05D001775 ORTHO05D008700 4.8e-09 64.3 30 96.7
Aa31LG3G2590 Aethionema arabicum HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
AL3G21390 Arabidopsis lyrata HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
AT3G10060 Arabidopsis thaliana HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
Carub.0003s0916 Capsella rubella HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
CAN.G1830.11 Capsicum annuum HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
AUR62042695 Chenopodium quinoa HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
Eucgr.K02414 Eucalyptus grandis HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
Nn2g13922 Nelumbo nucifera HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
TWI77G0546 Tripterygium wilfordii HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
vmacro07354 Vaccinium macrocarpon HOM05D001775 ORTHO05D008700 1.1e-08 63.2 30 93.3
HPP92_027841 Vanilla planifolia HOM05D001775 ORTHO05D008700 1.1e-08 63.2 41 70.7
DCAR_017644 Daucus carota HOM05D001775 ORTHO05D008700 1.4e-08 62.8 32 84.4
Gohir.A01G211700 Gossypium hirsutum HOM05D001775 ORTHO05D008700 1.4e-08 62.8 30 90.0
Gohir.D01G200500 Gossypium hirsutum HOM05D001775 ORTHO05D008700 1.4e-08 62.8 30 90.0
Gorai.002G245200 Gossypium raimondii HOM05D001775 ORTHO05D008700 1.4e-08 62.8 30 90.0
THA.LOC104826941 Tarenaya hassleriana HOM05D001775 ORTHO05D008700 1.4e-08 62.8 30 90.0
vmacro07228 Vaccinium macrocarpon HOM05D000167 ORTHO05D045266 1.8e-08 62.4 31 90.3
Peaxi162Scf01063g00114 Petunia axillaris HOM05D001775 ORTHO05D008700 2.4e-08 62.0 30 90.0
Psat6g078120 Pisum sativum HOM05D001775 ORTHO05D008700 2.4e-08 62.0 30 90.0
PGR142G0224 Punica granatum HOM05D001775 ORTHO05D008700 2.4e-08 62.0 30 90.0
Thecc.05G076600 Theobroma cacao HOM05D001775 ORTHO05D008700 2.4e-08 62.0 30 90.0
CARHR084560 Cardamine hirsuta HOM05D001775 ORTHO05D008700 3.1e-08 61.6 30 90.0
COL.COLO4_22265 Corchorus olitorius HOM05D007554 ORTHO05D008700 3.1e-08 61.6 30 90.0
Duzib106G0620 Durio zibethinus HOM05D001775 ORTHO05D008700 3.1e-08 61.6 30 90.0
QL07p041202 Quercus lobata HOM05D001775 ORTHO05D008700 3.1e-08 61.6 49 57.1
Rhsim03G0085600 Rhododendron simsii HOM05D001775 ORTHO05D008700 3.1e-08 61.6 31 83.9
Sabra16G0099800 Salix brachista HOM05D001775 ORTHO05D008700 3.1e-08 61.6 31 90.3
Sp3g08370 Schrenkiella parvula HOM05D001775 ORTHO05D008700 3.1e-08 61.6 30 93.3
TAR636G1968 Trochodendron aralioides HOM05D001775 ORTHO05D008700 3.1e-08 61.6 41 65.9
CANSAT25G3870 Cannabis sativa HOM05D001775 ORTHO05D008700 4.1e-08 61.2 30 90.0
Ciclev10012638m.g Citrus clementina HOM05D001775 ORTHO05D008700 4.1e-08 61.2 30 90.0
Haze_19488 Corylus avellana HOM05D000140 ORTHO05D000087 4.1e-08 61.2 31 87.1
Ah.15g091350 Amaranthus hybridus HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
arahy.Tifrunner.gnm1.ann1.BLF45B Arachis hypogaea HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 86.7
arahy.Tifrunner.gnm1.ann1.V2ZWQA Arachis hypogaea HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 86.7
A05p38990 Brassica napus HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
C05p58020 Brassica napus HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
BolC5t34458H Brassica oleracea HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
BraA05t22690Z Brassica rapa HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
CDE09G0920 Ceratophyllum demersum HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
Haze_19498 Corylus avellana HOM05D000031 ORTHO05D001864 5.3e-08 60.8 30 90.0
Lsat_1_v5_gn_2_24101 Lactuca sativa HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 86.7
Lj5g0004178 Lotus japonicus HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 86.7
Phvul.007G225600 Phaseolus vulgaris HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
SGA_v2.0_scaffold75G24814 Striga asiatica HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
VMungo0720G1353 Vigna mungo HOM05D001775 ORTHO05D008700 5.3e-08 60.8 30 90.0
Ca_11565_v3 Cicer arietinum L. HOM05D001775 ORTHO05D008700 7.0e-08 60.5 30 90.0
Ca_11566_v3 Cicer arietinum L. HOM05D007554 ORTHO05D008700 7.0e-08 60.5 30 90.0
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 7.0e-08 60.5 30 83.3
HanXRQChr01g0016601 Helianthus annuus HOM05D001775 ORTHO05D008700 7.0e-08 60.5 30 83.3
SalBow3G4002 Salvia bowleyana HOM05D001775 ORTHO05D008700 7.0e-08 60.5 31 83.9
Hund04101 Selenicereus undatus HOM05D001775 ORTHO05D008700 7.0e-08 60.5 37 70.3
TPR.G27078 Trifolium pratense HOM05D001775 ORTHO05D008700 7.0e-08 60.5 30 86.7
unitig_8.g4124 Utricularia gibba HOM05D001775 ORTHO05D008700 7.0e-08 60.5 41 65.9
Atru.chr8.1674 Acer truncatum HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 90.0
Cfa016496 Carpinus fangiana HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
Hma1.2p1_1578F.1_g291820 Hydrangea macrophylla HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
Hma1.2p1_1578F.1_g291830 Hydrangea macrophylla HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
Manes.09G047800 Manihot esculenta HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 90.0
Potri.016G096600 Populus trichocarpa HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 90.0
RcHm_v2.0_Chr3g0471471 Rosa chinensis HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
Sabra16G0099900 Salix brachista HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 90.0
Sed0004809 Sechium edule HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
GSVIVG01033728001 Vitis vinifera HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
Zm00001eb302310 Zea mays HOM05D001775 ORTHO05D008700 9.1e-08 60.1 30 86.7
CiPaw.09G005800 Carya illinoinensis HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
MELO3C009415.2 Cucumis melo HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
CsaV3_3G036610 Cucumis sativus L. HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
Migut.J00481 Erythranthe guttata HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 90.0
Glyma.10G063800 Glycine max HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
Glyma.13G148400 Glycine max HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
MD12G1101900 Malus domestica HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
Nitab4.5_0004281g0100 Nicotiana tabacum HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
PSO339G2214 Papaver somniferum HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
PSO801G0321 Papaver somniferum HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
Sc07g0004660 Simmondsia chinensis HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
Solyc09g008650.3 Solanum lycopersicum HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
Sopen09g003450 Solanum pennellii HOM05D001775 ORTHO05D008700 1.2e-07 59.7 30 86.7
ATR0665G470 Amborella trichopoda HOM05D001775 ORTHO05D008700 1.6e-07 59.3 41 65.9
EL10Ac7g16723 Beta vulgaris HOM05D001775 ORTHO05D008700 1.6e-07 59.3 30 83.3
Dinv35841 Davidia involucrata HOM05D001775 ORTHO05D008700 1.6e-07 59.3 41 63.4
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 1.6e-07 59.3 31 80.6
FAN14G0141 Fragaria x ananassa HOM05D000031 ORTHO05D001864 1.6e-07 59.3 31 80.6
Lalb_Chr21g0315301 Lupinus albus HOM05D001775 ORTHO05D008700 1.6e-07 59.3 30 83.3
Actinidia28942 Actinidia chinensis HOM05D001775 ORTHO05D008700 2.0e-07 58.9 30 83.3
Cpa.g.sc5.118 Carica papaya HOM05D001775 ORTHO05D008700 2.0e-07 58.9 30 83.3
FvH4_6g17331 Fragaria vesca HOM05D001775 ORTHO05D008700 2.0e-07 58.9 30 83.3
FAN02G3766 Fragaria x ananassa HOM05D000031 ORTHO05D001864 2.0e-07 58.9 30 83.3
Nitab4.5_0006709g0020 Nicotiana tabacum HOM05D001775 ORTHO05D008700 2.0e-07 58.9 30 86.7
RcHm_v2.0_Chr1g0340031 Rosa chinensis HOM05D001775 ORTHO05D008700 2.0e-07 58.9 33 78.8
CSS0006417 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D008700 2.7e-07 58.5 30 83.3
CSS0034418 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D008700 2.7e-07 58.5 30 83.3
Cc06_g04850 Coffea canephora HOM05D001775 ORTHO05D008700 2.7e-07 58.5 30 86.7
Medtr1g061850 Medicago truncatula HOM05D001775 ORTHO05D008700 2.7e-07 58.5 30 83.3
Prupe.7G122200 Prunus persica HOM05D000031 ORTHO05D001864 2.7e-07 58.5 30 83.3
CDE02G3585 Ceratophyllum demersum HOM05D001775 ORTHO05D008700 3.5e-07 58.2 36 75.0
Mapoly0135s0005 Marchantia polymorpha HOM05D001775 ORTHO05D008700 3.5e-07 58.2 41 65.9
Oeu031869.1 Olea europaea HOM05D001775 ORTHO05D008700 3.5e-07 58.2 30 80.0
Lj3A1008G65 Lonicera japonica HOM05D001775 ORTHO05D008700 4.5e-07 57.8 30 83.3
SEGI_08504 Sequoiadendron giganteum HOM05D001775 ORTHO05D008700 4.5e-07 57.8 41 63.4
Aqoxy2G01547 Aquilegia oxysepala HOM05D001775 ORTHO05D008700 1.7e-06 55.8 30 83.3
SMO367G0543 Selaginella moellendorffii HOM05D001775 ORTHO05D008700 2.2e-06 55.5 40 62.5
C03p43370 Brassica napus HOM05D001775 ORTHO05D008700 5.0e-06 54.3 28 89.3
BolC3t16608H Brassica oleracea HOM05D001775 ORTHO05D008700 5.0e-06 54.3 28 89.3
AagrBONN_evm.TU.Sc2ySwM_368.219 Anthoceros agrestis HOM05D001775 ORTHO05D008700 6.5e-06 53.9 41 63.4
Pp3c17_4710 Physcomitrium patens HOM05D001775 ORTHO05D008700 6.5e-06 53.9 41 61.0


User provided reference genes

Program Settings