Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15027 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 3.8e-179 631.3 311 100.0
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 7.6e-143 510.8 303 83.5
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 5.4e-133 478.0 303 77.9
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 9.3e-133 477.2 303 77.9
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 8.7e-131 470.7 305 77.4
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 5.6e-130 468.0 303 76.2
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 5.6e-130 468.0 303 76.2
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 7.1e-125 451.1 294 75.5
vmacro15024 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 3.7e-121 438.7 263 86.3
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 3.1e-120 435.6 307 73.0
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 6.7e-107 391.3 307 64.8
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 7.4e-106 387.9 306 66.0
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 1.8e-104 383.3 303 64.0
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 4.1e-104 382.1 307 67.4
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 5.3e-104 381.7 306 64.4
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 9.1e-104 380.9 306 62.7
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 2.3e-99 366.3 303 63.4
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 7.4e-98 361.3 310 58.4
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 9.7e-98 360.9 311 60.5
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 2.0e-95 353.2 305 57.4
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 5.9e-95 351.7 310 57.4
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 1.7e-94 350.1 308 60.4
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 2.7e-92 342.8 303 59.7
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 6.7e-91 338.2 306 56.9
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 8.8e-91 337.8 302 57.0
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 5.7e-90 335.1 317 56.8
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 7.4e-90 334.7 317 56.5
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 2.2e-89 333.2 350 52.6
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 4.8e-89 332.0 303 58.1
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 9.1e-88 327.8 308 54.9
MBI06_g22353_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 5.9e-87 325.1 311 55.3
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.3e-86 323.9 305 56.1
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 2.2e-86 323.2 296 55.7
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 2.9e-86 322.8 306 54.6
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 5.0e-86 322.0 305 58.0
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 1.6e-84 317.0 306 52.9
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.6e-84 317.0 287 55.4
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 1.6e-84 317.0 306 53.9
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 2.1e-84 316.6 306 52.9
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 4.7e-84 315.5 311 52.4
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 1.8e-83 313.5 303 53.1
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 1.8e-83 313.5 306 52.3
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 4.0e-83 312.4 310 53.5
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 1.7e-81 307.0 316 53.2
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 4.1e-80 302.4 357 48.2
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 9.1e-80 301.2 310 51.9
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 2.0e-79 300.1 310 51.9
CiPaw.01G219400 Carya illinoinensis HOM05D002969 ORTHO05D003308 2.0e-79 300.1 264 57.6
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 2.7e-79 299.7 310 50.6
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 3.5e-79 299.3 310 51.6
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 5.9e-79 298.5 310 50.3
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 1.3e-78 297.4 310 50.6
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 1.7e-78 297.0 310 50.3
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 1.7e-78 297.0 310 50.3
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 1.7e-78 297.0 310 50.3
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 1.7e-78 297.0 310 50.3
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 1.7e-78 297.0 310 50.3
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 2.9e-78 296.2 303 51.8
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 3.8e-78 295.8 296 51.0
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 1.1e-77 294.3 311 51.1
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 2.5e-77 293.1 291 52.9
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 7.2e-77 291.6 313 51.8
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 9.4e-77 291.2 306 50.3
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.2e-76 290.8 310 51.0
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 1.2e-76 290.8 310 50.0
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 2.7e-76 289.7 296 50.0
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 1.8e-75 287.0 310 50.0
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 4.0e-75 285.8 306 50.7
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 5.2e-75 285.4 310 50.6
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.8e-75 284.6 316 49.4
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 4.4e-74 282.3 277 55.2
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 7.5e-74 281.6 316 48.7
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.5e-74 281.6 306 50.0
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 9.8e-74 281.2 306 48.0
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 1.3e-73 280.8 316 48.7
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.3e-73 280.8 316 48.7
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 3.7e-73 279.3 307 52.4
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 4.9e-73 278.9 306 49.7
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 6.3e-73 278.5 310 49.4
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 6.3e-73 278.5 316 50.6
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 5.4e-72 275.4 310 49.7
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 7.0e-72 275.0 307 51.8
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 1.2e-71 274.2 311 48.9
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.7e-71 273.1 313 47.6
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 1.0e-70 271.2 313 50.8
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.1e-69 267.7 359 44.3
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.0e-67 261.2 310 48.1
Cpa.g.sc34.76 Carica papaya HOM05D002969 ORTHO05D003308 3.7e-65 252.7 261 52.5
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 4.9e-65 252.3 314 47.1
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 1.1e-64 251.1 305 46.6
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 2.7e-63 246.5 303 45.2
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 2.3e-62 243.4 314 44.3
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 2.5e-61 240.0 316 43.4
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 7.3e-61 238.4 315 43.2
Zm00001eb254770 Zea mays HOM05D002969 ORTHO05D003308 9.5e-61 238.0 311 43.4
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 4.7e-60 235.7 307 43.6
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 3.1e-59 233.0 310 43.5
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 5.2e-59 232.3 308 41.9
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 5.8e-58 228.8 309 40.5
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 1.3e-57 227.6 310 44.5
Zm00001eb247980 Zea mays HOM05D002969 ORTHO05D003308 1.7e-57 227.3 290 43.4
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 1.9e-56 223.8 310 43.5
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 4.1e-56 222.6 305 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 4.6e-55 219.2 319 41.7
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 1.3e-54 217.6 302 43.0
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 3.9e-54 216.1 307 38.4
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 3.3e-53 213.0 314 40.4
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 3.3e-53 213.0 312 40.1
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 9.5e-53 211.5 318 42.1
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 2.8e-52 209.9 313 41.2
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 8.1e-52 208.4 182 57.1
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 1.4e-51 207.6 307 39.7
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 3.7e-49 199.5 308 39.6
GSVIVG01001689001 Vitis vinifera HOM05D002969 ORTHO05D003308 3.7e-49 199.5 167 60.5
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 6.4e-49 198.7 180 56.1
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.1e-48 198.0 260 46.2
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 1.9e-48 197.2 310 40.3
PSO478G1045 Papaver somniferum HOM05D002969 ORTHO05D003308 2.3e-46 190.3 196 54.6
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 3.0e-46 189.9 309 41.1
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 4.3e-45 186.0 308 38.6
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.8e-44 183.3 186 55.9
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 4.7e-44 182.6 310 39.0
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 4.7e-44 182.6 311 37.6
Os05g0569900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 8.9e-43 178.3 269 37.9
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 4.4e-42 176.0 311 39.5
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 8.1e-36 155.2 294 33.7
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.1e-36 155.2 294 33.7
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.9e-35 151.8 291 33.0
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 4.9e-33 146.0 169 48.5
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.4e-32 143.7 164 48.2
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 9.3e-32 141.7 303 31.7
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 1.6e-31 141.0 173 46.8
CAN.G397.52 Capsicum annuum HOM05D002969 ORTHO05D003308 4.3e-29 132.9 123 52.0
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 1.8e-27 127.5 358 30.7
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 1.8e-27 127.5 126 50.0
SEGI_00337 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 7.6e-26 122.1 130 53.8
Peaxi162Scf00006g00211 Petunia axillaris HOM05D002969 ORTHO05D003308 1.6e-23 114.4 116 49.1
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 8.7e-22 108.6 274 32.1
Nitab4.5_0010825g0020 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.6e-20 103.2 139 38.8
COL.COLO4_30699 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.1e-19 101.7 126 43.7
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 1.7e-17 94.4 64 67.2
RcHm_v2.0_Chr6g0291541 Rosa chinensis HOM05D002969 ORTHO05D003308 4.9e-17 92.8 128 40.6
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.3e-14 84.7 107 40.2
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 3.0e-14 83.6 107 40.2
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.1e-13 81.6 107 38.3
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 1.9e-13 80.9 320 25.3
Potri.001G170001 Populus trichocarpa HOM05D002969 ORTHO05D003308 1.9e-13 80.9 96 47.9
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 7.6e-10 68.9 74 44.6
COL.COLO4_38602 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.1e-08 65.1 99 41.4
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 1.0e-06 58.5 47 59.6
QL10p018850 Quercus lobata HOM05D002969 ORTHO05D003308 8.7e-06 55.5 80 41.2


User provided reference genes

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