Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 5.9e-172 607.4 308 100.0
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.4e-101 372.9 215 87.4
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.6e-100 370.2 214 87.4
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 6.0e-100 368.2 214 88.3
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.3e-99 366.3 214 86.9
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.0e-99 365.9 214 85.5
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.9e-99 365.5 215 87.4
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.7e-99 364.8 214 87.9
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 8.7e-99 364.4 214 86.9
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 3.3e-98 362.5 214 85.5
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.3e-98 362.5 214 86.4
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 7.4e-98 361.3 214 86.9
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 3.7e-97 359.0 214 84.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 4.8e-97 358.6 204 89.7
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 6.2e-97 358.2 214 84.6
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 1.4e-96 357.1 214 84.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.8e-96 356.7 214 85.0
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.8e-96 356.7 214 83.6
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.4e-96 356.3 215 82.8
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 2.4e-96 356.3 214 84.1
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.1e-96 355.9 214 83.2
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 4.0e-96 355.5 214 84.6
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.0e-96 355.5 214 85.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 4.0e-96 355.5 214 84.6
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 4.0e-96 355.5 217 82.0
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 6.9e-96 354.8 214 81.8
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 6.9e-96 354.8 214 84.1
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.2e-95 354.0 217 82.0
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.2e-95 354.0 214 85.0
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.0e-95 353.2 209 84.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 2.0e-95 353.2 214 83.2
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.6e-95 352.8 215 84.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 3.4e-95 352.4 214 82.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.4e-95 352.4 210 85.2
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.8e-95 351.7 220 81.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.7e-94 350.1 266 69.2
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.7e-94 350.1 214 82.7
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.7e-94 350.1 240 77.9
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.7e-94 350.1 215 84.2
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.7e-94 350.1 227 78.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.2e-94 349.7 215 84.2
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.2e-94 349.7 214 81.8
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.9e-94 349.4 214 82.2
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.9e-94 349.4 214 82.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.9e-94 349.4 214 82.7
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 2.9e-94 349.4 214 83.2
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.8e-94 349.0 214 83.2
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 3.8e-94 349.0 214 83.2
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.8e-94 349.0 203 87.2
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.9e-94 348.6 214 80.8
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 4.9e-94 348.6 214 82.2
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 4.9e-94 348.6 204 84.8
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.4e-94 348.2 214 81.8
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 6.4e-94 348.2 214 82.2
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 6.4e-94 348.2 216 84.3
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 8.4e-94 347.8 214 81.3
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.1e-93 347.4 231 76.2
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.1e-93 347.4 214 82.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-93 347.1 207 83.1
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.9e-93 346.7 207 83.1
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.9e-93 346.7 214 83.2
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.4e-93 346.3 210 85.2
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 3.2e-93 345.9 214 81.3
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 3.2e-93 345.9 218 80.7
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 3.2e-93 345.9 214 80.8
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 4.2e-93 345.5 214 81.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 4.2e-93 345.5 210 83.8
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 4.2e-93 345.5 214 81.3
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 5.5e-93 345.1 214 80.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 7.1e-93 344.7 215 82.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 7.1e-93 344.7 214 80.4
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 9.3e-93 344.4 209 81.3
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.2e-92 344.0 214 81.8
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-92 344.0 207 82.6
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.6e-92 343.6 214 80.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.6e-92 343.6 214 80.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 2.7e-92 342.8 214 79.4
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.5e-92 342.4 209 80.9
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 4.6e-92 342.0 214 80.4
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.6e-92 342.0 206 84.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 4.6e-92 342.0 208 82.2
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 6.0e-92 341.7 209 81.3
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 6.0e-92 341.7 209 82.3
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.9e-92 341.3 215 80.0
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.0e-91 340.9 201 83.6
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.0e-91 340.9 214 80.8
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.3e-91 340.5 214 79.9
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.3e-91 340.5 240 74.2
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.3e-91 340.5 210 81.9
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.8e-91 340.1 214 79.0
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.8e-91 340.1 216 81.0
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 2.3e-91 339.7 214 80.8
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 3.0e-91 339.3 238 74.4
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 5.1e-91 338.6 204 82.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 6.7e-91 338.2 204 82.8
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.1e-90 337.4 194 86.1
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.5e-90 336.3 214 79.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.3e-90 335.9 209 79.9
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 3.3e-90 335.9 204 82.4
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.3e-90 335.5 214 78.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.1e-89 333.2 199 86.9
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.1e-88 330.9 205 80.5
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.1e-88 330.9 220 77.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.4e-88 329.7 204 80.4
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.4e-88 329.7 214 75.7
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 5.3e-88 328.6 242 72.3
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.0e-87 326.6 214 76.6
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.2e-86 323.2 193 81.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 6.5e-86 321.6 193 82.9
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.1e-85 320.9 192 82.3
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 9.3e-85 317.8 214 76.2
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.8e-83 313.5 242 69.0
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 9.7e-82 307.8 191 81.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 2.2e-81 306.6 185 83.2
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.7e-81 305.8 190 81.6
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.1e-80 302.8 201 73.6
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.7e-78 297.0 201 72.1
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-77 293.9 196 76.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 7.9e-76 288.1 214 72.0
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 1.7e-70 270.4 168 81.5
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 1.4e-69 267.3 200 67.5
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.2e-69 265.0 208 70.2
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 7.2e-69 265.0 213 66.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 2.3e-67 260.0 151 82.1
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 7.4e-66 255.0 154 83.8
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 7.4e-66 255.0 202 64.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.2e-65 253.4 151 82.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.1e-64 251.1 164 78.0
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.1e-64 249.6 151 78.8
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 6.5e-62 241.9 181 70.7
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.1e-61 241.1 214 65.0
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.5e-61 240.0 196 62.2
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.6e-60 237.3 153 76.5
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 8.0e-60 235.0 160 76.2
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.4e-56 223.4 223 52.9
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 6.7e-51 205.3 131 75.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.7e-49 200.7 215 50.7
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.4e-48 197.6 188 60.1
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.8e-41 172.6 115 76.5
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 3.3e-37 159.8 108 75.9
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.3e-35 153.7 89 78.7
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 3.9e-30 136.3 92 71.7
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.0e-28 128.6 87 74.7
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.3e-27 127.1 101 67.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 6.4e-25 119.0 135 51.9
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 5.0e-22 109.4 102 62.7
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.4e-19 101.3 63 77.8
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.4e-18 96.3 51 92.2
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.2e-16 90.1 97 51.5
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 9.5e-13 78.6 68 55.9
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.6e-12 77.8 70 65.7
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.8e-11 74.3 114 43.0
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 6.4e-09 65.9 204 26.5
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.1e-08 62.4 63 57.1
SGA_v2.0_scaffold131G34397 Striga asiatica HOM05D000083 ORTHO05D000196 6.6e-06 55.8 157 27.4


User provided reference genes

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