Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14879 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 2.8e-133 479.2 358 100.0
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 8.9e-71 271.6 166 87.3
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 2.3e-66 256.9 166 81.9
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 4.7e-64 249.2 169 81.7
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 2.4e-63 246.9 166 77.7
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.3e-61 241.1 160 77.5
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 2.4e-60 236.9 162 79.6
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 7.1e-60 235.3 169 75.7
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 1.2e-59 234.6 162 77.8
Nitab4.5_0000393g0110 Nicotiana tabacum HOM05D005044 ORTHO05D006799 1.0e-58 231.5 162 74.7
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 1.7e-58 230.7 164 76.8
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 1.7e-58 230.7 166 74.7
Nitab4.5_0004093g0010 Nicotiana tabacum HOM05D005044 ORTHO05D006799 2.3e-58 230.3 162 74.1
Peaxi162Scf01826g00015 Petunia axillaris HOM05D005044 ORTHO05D006799 5.1e-58 229.2 160 76.2
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 6.6e-58 228.8 164 75.0
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 6.6e-58 228.8 168 70.2
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 8.7e-58 228.4 170 72.4
Sabra02G0036900 Salix brachista HOM05D005044 ORTHO05D006799 1.1e-57 228.0 173 74.0
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 1.5e-57 227.6 170 76.5
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 2.5e-57 226.9 168 70.2
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 5.6e-57 225.7 184 69.0
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 5.6e-57 225.7 167 72.5
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 7.3e-57 225.3 161 75.2
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 7.3e-57 225.3 170 73.5
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 9.6e-57 224.9 164 73.8
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 2.1e-56 223.8 170 74.1
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 2.8e-56 223.4 164 73.2
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 3.6e-56 223.0 170 71.2
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 3.6e-56 223.0 172 71.5
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 3.6e-56 223.0 172 72.1
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 3.6e-56 223.0 165 72.7
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 4.7e-56 222.6 162 75.3
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 8.1e-56 221.9 172 70.9
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 1.4e-55 221.1 173 72.8
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 1.4e-55 221.1 171 71.3
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 2.4e-55 220.3 169 69.8
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 3.1e-55 219.9 171 71.9
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 3.1e-55 219.9 171 71.9
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 4.0e-55 219.5 171 71.9
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 4.0e-55 219.5 171 71.9
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 6.9e-55 218.8 165 69.1
unitig_22.g5955 Utricularia gibba HOM05D005044 ORTHO05D006799 6.9e-55 218.8 169 67.5
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 2.6e-54 216.9 171 70.8
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 3.4e-54 216.5 168 69.6
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 4.4e-54 216.1 170 73.5
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 9.9e-54 214.9 168 73.2
Potri.005G217400 Populus trichocarpa HOM05D005044 ORTHO05D006799 2.2e-53 213.8 172 71.5
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 3.8e-53 213.0 174 70.1
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 3.8e-53 213.0 167 73.7
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 3.8e-53 213.0 152 77.0
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 6.4e-53 212.2 174 66.7
Manes.01G202300 Manihot esculenta HOM05D005044 ORTHO05D006799 1.4e-52 211.1 145 78.6
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 3.2e-52 209.9 175 68.6
Ca_08641_v3 Cicer arietinum L. HOM05D005044 ORTHO05D006799 4.2e-52 209.5 160 70.6
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 4.2e-52 209.5 152 73.7
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 7.1e-52 208.8 149 75.2
CARHR164510 Cardamine hirsuta HOM05D005044 ORTHO05D006799 1.2e-51 208.0 168 70.2
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 1.2e-51 208.0 166 68.1
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 1.6e-51 207.6 169 68.6
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 2.7e-51 206.8 149 74.5
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 2.7e-51 206.8 170 66.5
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 2.7e-51 206.8 175 70.3
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 3.5e-51 206.5 169 65.7
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 6.0e-51 205.7 168 68.5
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 6.0e-51 205.7 149 75.2
Cfa002318 Carpinus fangiana HOM05D005044 ORTHO05D006799 7.8e-51 205.3 152 75.0
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 1.0e-50 204.9 163 68.7
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 1.0e-50 204.9 168 69.0
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 2.3e-50 203.8 164 66.5
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 3.9e-50 203.0 179 63.7
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 1.1e-49 201.4 179 63.1
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 1.1e-49 201.4 172 65.7
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 1.5e-49 201.1 168 67.9
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 2.5e-49 200.3 168 66.1
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 2.5e-49 200.3 168 66.7
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 4.3e-49 199.5 147 73.5
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 9.6e-49 198.4 168 64.9
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 9.6e-49 198.4 164 65.9
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 1.3e-48 198.0 168 66.7
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 2.8e-48 196.8 180 64.4
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 4.8e-48 196.1 170 65.9
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 1.4e-47 194.5 164 64.0
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 2.4e-47 193.7 162 64.2
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 4.0e-47 193.0 169 65.7
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 4.0e-47 193.0 130 73.8
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 6.9e-47 192.2 163 62.6
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 1.2e-46 191.4 129 76.0
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 1.5e-46 191.0 130 73.1
HPP92_024856 Vanilla planifolia HOM05D005044 ORTHO05D006799 5.8e-46 189.1 181 58.0
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 1.7e-45 187.6 158 67.1
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 2.2e-45 187.2 158 63.9
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 2.9e-45 186.8 175 62.3
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 3.8e-45 186.4 107 86.9
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 8.4e-45 185.3 158 66.5
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 4.2e-44 183.0 213 53.5
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 8.7e-42 175.3 100 82.0
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 9.6e-41 171.8 168 59.5
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 1.3e-40 171.4 168 59.5
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 1.6e-40 171.0 168 61.3
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 1.6e-40 171.0 168 61.3
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 2.1e-40 170.6 168 61.3
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 2.1e-40 170.6 168 59.5
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 2.8e-40 170.2 168 58.9
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 6.2e-40 169.1 173 58.4
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 2.4e-39 167.2 158 56.3
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 2.4e-39 167.2 89 87.6
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 4.0e-39 166.4 111 73.0
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 1.2e-38 164.9 173 57.2
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 7.6e-38 162.2 170 59.4
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 1.3e-37 161.4 173 57.8
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 1.3e-37 161.4 147 64.6
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 1.7e-37 161.0 129 61.2
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 8.4e-37 158.7 162 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1037 Anthoceros agrestis HOM05D005044 ORTHO05D006799 5.5e-36 156.0 152 55.3
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 1.2e-35 154.8 180 50.0
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 9.6e-33 145.2 120 61.7
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 6.9e-31 139.0 114 61.4
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 3.5e-27 126.7 72 83.3
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 8.7e-26 122.1 73 72.6
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 3.4e-22 110.2 147 40.1
BolC9t54871H Brassica oleracea HOM05D005044 ORTHO05D006799 5.0e-21 106.3 171 47.4
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 2.1e-19 100.9 56 80.4
BcaC04g22409 Brassica carinata HOM05D005044 ORTHO05D000065 3.6e-19 100.1 179 44.7
Cre06.g256200 Chlamydomonas reinhardtii HOM05D005044 ORTHO05D006799 7.9e-19 99.0 85 55.3
FAN24G2420 Fragaria x ananassa HOM05D005044 ORTHO05D020615 1.4e-18 98.2 84 64.3
FAN07G0333 Fragaria x ananassa HOM05D005044 ORTHO05D020615 1.8e-18 97.8 86 62.8
C09p19690 Brassica napus HOM05D005044 ORTHO05D006799 3.9e-18 96.7 179 44.1
Cfa021827 Carpinus fangiana HOM05D005044 ORTHO05D006799 8.5e-13 79.0 73 50.7
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 5.5e-12 76.3 76 55.3
PRCOL_00003272 Prasinoderma coloniale HOM05D005044 ORTHO05D006799 4.7e-11 73.2 84 46.4
BcaC03g14692 Brassica carinata HOM05D000313 ORTHO05D000065 6.7e-10 69.3 138 42.0
Haze_26753 Corylus avellana HOM05D005044 ORTHO05D006799 2.6e-09 67.4 84 35.7
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 3.7e-08 63.5 62 58.1
Ah.11g050050 Amaranthus hybridus HOM05D005044 ORTHO05D060978 1.1e-07 62.0 89 51.7


User provided reference genes

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