Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.4e-148 529.6 274 100.0
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.2e-103 378.3 271 71.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.7e-99 364.4 271 70.1
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.5e-98 361.3 272 71.3
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.5e-97 360.1 272 71.0
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.4e-92 342.8 272 65.1
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 9.2e-92 340.9 288 64.2
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 5.0e-90 335.1 265 71.7
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.5e-89 333.6 269 65.8
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.5e-89 332.8 269 62.5
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 9.5e-89 330.9 230 71.7
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 2.3e-87 326.2 268 61.9
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.0e-87 325.9 270 66.3
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.5e-86 323.6 269 62.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.6e-86 322.8 272 61.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.4e-86 322.0 270 65.9
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.3e-85 320.5 270 65.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 1.7e-85 320.1 268 62.3
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 3.7e-85 318.9 280 59.6
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.4e-84 317.0 269 63.6
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.8e-84 316.6 270 61.9
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.8e-84 316.6 306 57.2
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.4e-84 316.2 268 62.7
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.2e-84 315.8 272 63.2
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.2e-84 315.8 272 63.2
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 3.2e-84 315.8 275 65.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 5.4e-84 315.1 268 60.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 9.2e-84 314.3 268 61.2
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 2.0e-83 313.2 292 59.2
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 2.0e-83 313.2 268 60.4
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.6e-83 312.0 267 61.0
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.6e-83 312.0 268 60.8
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 4.6e-83 312.0 266 61.3
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 4.6e-83 312.0 268 60.4
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 5.9e-83 311.6 291 58.8
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.9e-83 311.6 264 60.2
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 5.9e-83 311.6 273 60.1
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 7.8e-83 311.2 270 60.7
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 7.8e-83 311.2 268 60.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 7.8e-83 311.2 268 60.8
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 7.8e-83 311.2 271 59.8
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.0e-82 310.8 264 61.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.3e-82 310.5 272 59.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.7e-82 310.1 269 59.1
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.7e-82 310.1 270 61.1
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.9e-82 308.9 268 60.8
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 6.6e-82 308.1 264 60.6
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.5e-81 307.0 269 60.6
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.9e-81 306.6 271 61.6
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.5e-81 306.2 275 61.1
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 2.5e-81 306.2 355 51.8
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.5e-81 306.2 279 59.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 3.3e-81 305.8 269 60.6
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 3.3e-81 305.8 282 58.9
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 4.3e-81 305.4 266 61.3
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 7.3e-81 304.7 212 72.6
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.2e-80 303.9 206 75.2
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.1e-80 303.1 268 60.8
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 2.1e-80 303.1 271 59.8
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 2.8e-80 302.8 270 60.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.6e-80 302.4 269 59.9
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 6.2e-80 301.6 266 59.8
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 8.0e-80 301.2 268 59.3
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.4e-79 300.4 245 63.3
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.3e-79 299.7 266 60.5
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 6.8e-79 298.1 273 56.8
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 8.9e-79 297.7 270 59.3
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 8.9e-79 297.7 270 60.7
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.2e-78 297.4 273 56.8
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.5e-78 297.0 283 59.4
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.0e-78 296.6 263 59.3
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 3.4e-78 295.8 269 58.4
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.3e-77 293.9 202 69.3
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 2.9e-77 292.7 268 57.5
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 8.3e-77 291.2 262 59.5
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 4.1e-76 288.9 262 58.0
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 5.4e-76 288.5 265 58.9
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.0e-76 288.1 269 55.4
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 9.2e-76 287.7 265 57.4
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 9.2e-76 287.7 265 57.4
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 9.2e-76 287.7 201 70.1
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-75 287.0 265 57.7
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.0e-75 286.6 265 58.5
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 2.0e-75 286.6 227 64.3
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.0e-75 286.6 269 55.8
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.7e-75 286.2 264 57.6
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.7e-75 286.2 267 54.3
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 3.5e-75 285.8 269 56.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 6.0e-75 285.0 263 57.0
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 6.0e-75 285.0 209 67.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.3e-74 283.9 268 55.6
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 6.6e-74 281.6 262 56.9
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 6.6e-74 281.6 240 60.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 9.5e-73 277.7 272 61.0
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.2e-72 277.3 225 61.3
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 6.8e-71 271.6 190 71.6
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 8.9e-71 271.2 271 53.9
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 4.4e-70 268.9 267 53.9
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.7e-69 265.8 186 71.0
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 6.4e-69 265.0 216 67.1
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.4e-68 261.9 268 51.1
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 2.7e-67 259.6 221 59.7
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 5.1e-66 255.4 225 60.4
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.6e-64 250.4 230 59.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.8e-63 246.9 186 69.9
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 4.4e-62 242.3 268 53.4
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.9e-61 239.6 209 60.3
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.8e-61 239.2 223 55.2
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.4e-60 237.3 204 60.8
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.5e-57 226.5 431 39.7
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 5.6e-57 225.3 164 68.9
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 5.6e-57 225.3 189 60.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 9.6e-57 224.6 245 50.6
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.1e-56 223.4 270 48.1
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.1e-55 221.1 266 46.6
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 5.2e-55 218.8 186 59.1
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.2e-54 217.6 215 57.2
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.5e-54 217.2 179 65.9
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 4.9e-53 212.2 184 61.4
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.2e-52 209.1 180 59.4
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 6.0e-51 205.3 210 50.5
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.3e-50 204.1 181 58.6
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 4.3e-49 199.1 154 64.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 4.3e-49 199.1 154 64.3
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.6e-40 170.6 257 37.4
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.6e-40 170.6 135 66.7
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 3.7e-40 169.5 155 57.4
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 4.8e-40 169.1 199 46.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 4.0e-39 166.0 166 54.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 7.6e-38 161.8 114 68.4
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.4e-37 158.3 154 56.5
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-33 147.9 119 67.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 9.6e-33 144.8 179 48.6
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 9.0e-31 138.3 119 60.5
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.9e-29 133.3 201 41.8
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 3.2e-28 129.8 147 50.3
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.2e-27 127.9 144 48.6
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 4.8e-24 115.9 150 47.3
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 4.8e-24 115.9 150 47.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 8.2e-24 115.2 131 49.6
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 4.1e-23 112.8 131 48.1
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-20 104.4 123 48.0
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 9.3e-20 101.7 203 33.0
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 9.3e-20 101.7 67 65.7
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.7e-19 100.1 101 59.4
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.4e-15 87.8 88 56.8
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 7.7e-14 82.0 86 53.5
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.0e-13 81.6 82 51.2
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.5e-13 79.0 103 45.6
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 9.4e-12 75.1 105 41.9
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.2e-11 74.7 101 48.5
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 9.7e-09 65.1 70 52.9
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 1.1e-07 61.6 95 41.1
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 1.5e-06 57.8 34 79.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.0e-06 57.4 40 75.0


User provided reference genes

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