Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 3.2e-170 601.7 305 100.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 3.3e-90 335.9 305 64.3
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.9e-77 293.5 301 56.5
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.6e-73 279.3 305 55.1
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.6e-65 253.8 143 86.0
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 4.0e-64 249.2 146 81.5
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.5e-63 247.3 139 83.5
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 4.5e-63 245.7 141 83.7
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 7.6e-63 245.0 137 84.7
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.3e-62 244.2 138 84.8
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 1.3e-62 244.2 138 84.8
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 3.8e-62 242.7 140 82.1
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 4.9e-62 242.3 140 83.6
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 4.9e-62 242.3 135 84.4
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.1e-61 241.1 140 82.9
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.1e-61 241.1 144 79.2
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.1e-61 241.1 138 84.1
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.4e-61 240.7 141 83.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 1.9e-61 240.4 140 82.9
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 2.4e-61 240.0 139 83.5
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 4.2e-61 239.2 140 81.4
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 4.2e-61 239.2 140 81.4
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.5e-61 238.8 143 79.7
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 9.3e-61 238.0 138 82.6
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.6e-60 237.3 138 84.1
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 2.1e-60 236.9 145 80.0
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.7e-60 236.5 139 82.0
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.7e-60 236.5 143 79.0
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 3.5e-60 236.1 132 85.6
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 3.5e-60 236.1 147 78.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 3.5e-60 236.1 139 80.6
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 3.5e-60 236.1 146 79.5
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 3.5e-60 236.1 158 73.4
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 4.6e-60 235.7 139 81.3
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 6.0e-60 235.3 153 75.8
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 7.9e-60 235.0 162 71.0
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 7.9e-60 235.0 132 83.3
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 7.9e-60 235.0 137 81.0
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-59 234.6 131 84.7
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.0e-59 234.6 131 84.7
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 1.0e-59 234.6 131 84.7
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.0e-59 234.6 144 77.1
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.0e-59 234.6 135 83.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.0e-59 234.6 138 80.4
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 1.0e-59 234.6 132 84.1
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.0e-59 234.6 145 76.6
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.0e-59 234.6 132 83.3
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.3e-59 234.2 143 78.3
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 1.8e-59 233.8 140 80.0
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.8e-59 233.8 138 81.9
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.3e-59 233.4 138 81.2
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 2.3e-59 233.4 140 80.0
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 3.0e-59 233.0 132 82.6
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 3.9e-59 232.6 147 75.5
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 5.1e-59 232.3 140 79.3
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 6.7e-59 231.9 132 82.6
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 8.7e-59 231.5 131 83.2
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 8.7e-59 231.5 136 82.4
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.5e-58 230.7 141 78.0
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.5e-58 230.7 141 78.0
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.5e-58 230.7 130 83.8
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.5e-58 230.7 133 83.5
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 1.5e-58 230.7 141 77.3
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.9e-58 230.3 143 77.6
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 3.3e-58 229.6 134 80.6
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 4.3e-58 229.2 131 83.2
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.3e-58 229.2 140 78.6
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.3e-58 229.2 140 78.6
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 5.6e-58 228.8 132 82.6
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 7.4e-58 228.4 137 80.3
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 9.6e-58 228.0 143 76.9
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 9.6e-58 228.0 140 78.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 9.6e-58 228.0 135 80.7
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.6e-57 227.3 131 84.0
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.1e-57 226.9 292 47.3
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 2.8e-57 226.5 144 75.0
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 2.8e-57 226.5 144 75.0
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 3.7e-57 226.1 135 80.7
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 3.7e-57 226.1 140 77.9
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 4.8e-57 225.7 137 78.1
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 4.8e-57 225.7 147 74.8
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 4.8e-57 225.7 138 76.8
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 4.8e-57 225.7 138 76.8
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 4.8e-57 225.7 138 76.8
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.8e-56 223.8 144 75.0
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.8e-56 223.8 131 82.4
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.8e-56 223.8 131 82.4
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 2.4e-56 223.4 133 80.5
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 3.1e-56 223.0 133 80.5
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 6.9e-56 221.9 132 81.1
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 6.9e-56 221.9 134 79.9
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.2e-55 221.1 134 80.6
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.2e-55 221.1 128 82.8
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 2.6e-55 219.9 143 75.5
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 2.6e-55 219.9 132 80.3
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.4e-55 219.5 305 47.2
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 5.8e-55 218.8 134 77.6
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 5.8e-55 218.8 134 77.6
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 5.8e-55 218.8 132 78.8
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 7.6e-55 218.4 151 70.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.0e-54 218.0 127 81.9
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.0e-54 218.0 141 73.8
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 1.7e-54 217.2 136 75.0
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 2.2e-54 216.9 127 81.1
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 3.8e-54 216.1 135 76.3
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 8.4e-54 214.9 137 74.5
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.6e-52 210.7 168 63.7
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.3e-51 207.6 130 76.2
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 3.0e-51 206.5 143 72.7
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.3e-49 201.1 128 78.1
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.1e-48 198.0 117 82.9
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.1e-48 198.0 128 75.0
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.2e-46 190.3 130 66.9
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.9e-45 187.2 132 67.4
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.5e-45 186.8 140 68.6
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 5.5e-45 185.7 129 67.4
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.0e-43 179.9 129 64.3
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.7e-41 172.9 129 62.0
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.7e-41 172.9 129 62.0
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.1e-40 169.9 129 60.5
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.2e-33 147.1 89 78.7
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 1.3e-30 137.9 80 81.2
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.7e-30 137.5 118 61.0
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 6.5e-30 135.6 80 81.2
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 5.5e-29 132.5 78 82.1
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.8e-25 120.2 135 47.4
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.6e-20 104.4 207 41.1
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.4e-19 101.3 64 73.4
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 1.4e-19 101.3 121 43.0
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.4e-19 101.3 140 40.7
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 5.7e-18 95.9 63 71.4
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.7e-17 94.4 56 76.8
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.1e-16 90.1 56 76.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.2e-15 88.2 49 83.7
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.0e-14 82.8 105 46.7
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 3.2e-13 80.1 62 64.5
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.6e-10 70.5 45 66.7
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 1.2e-07 61.6 32 87.5
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 1.3e-06 58.2 39 71.8
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 2.3e-06 57.4 74 45.9


User provided reference genes

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