Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14577 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 9.2e-259 896.3 446 100.0
Rhsim11G0072000 Rhododendron simsii HOM05D005010 ORTHO05D006065 4.2e-126 455.7 402 63.9
CSS0001208 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 2.2e-111 406.8 427 56.0
Actinidia10021 Actinidia chinensis HOM05D005010 ORTHO05D006065 1.1e-110 404.4 406 56.9
CSS0029232 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 1.1e-110 404.4 427 55.7
Dinv32470 Davidia involucrata HOM05D005010 ORTHO05D006065 6.9e-105 385.2 408 54.9
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 4.1e-89 332.8 411 48.4
Lj9C582G27 Lonicera japonica HOM05D005010 ORTHO05D006065 1.6e-85 320.9 408 48.0
Prupe.2G112100 Prunus persica HOM05D005010 ORTHO05D006065 1.6e-85 320.9 419 47.0
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 2.1e-85 320.5 412 47.6
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 6.1e-85 318.9 413 47.5
TAR629G2224 Trochodendron aralioides HOM05D005010 ORTHO05D006065 5.1e-84 315.8 412 45.1
Atru.chr5.463 Acer truncatum HOM05D005010 ORTHO05D006065 2.8e-82 310.1 357 51.8
GSVIVG01026897001 Vitis vinifera HOM05D005010 ORTHO05D006065 8.2e-82 308.5 337 51.3
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 6.9e-81 305.4 406 45.6
Manes.05G035400 Manihot esculenta HOM05D005010 ORTHO05D006065 5.9e-80 302.4 372 49.2
Potri.002G158800 Populus trichocarpa HOM05D005010 ORTHO05D006065 5.9e-80 302.4 414 44.4
vmacro13278 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 5.9e-80 302.4 364 53.0
RcHm_v2.0_Chr1g0343231 Rosa chinensis HOM05D005010 ORTHO05D006065 7.7e-80 302.0 423 45.4
Ciclev10020258m.g Citrus clementina HOM05D005010 ORTHO05D006065 2.5e-78 297.0 379 47.2
Sabra14G0060200 Salix brachista HOM05D005010 ORTHO05D006065 9.4e-78 295.0 427 43.1
QL08p049016 Quercus lobata HOM05D005010 ORTHO05D006065 1.2e-77 294.7 377 47.7
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 6.1e-77 292.4 383 46.7
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 7.9e-77 292.0 341 49.0
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 3.0e-76 290.0 403 44.2
Duzib268G0644 Durio zibethinus HOM05D005010 ORTHO05D006065 2.6e-75 287.0 411 44.3
Nitab4.5_0007225g0010 Nicotiana tabacum HOM05D005010 ORTHO05D006065 2.6e-75 287.0 368 47.6
RcHm_v2.0_Chr2g0122991 Rosa chinensis HOM05D005010 ORTHO05D006065 3.3e-75 286.6 418 44.0
Thecc.01G360400 Theobroma cacao HOM05D005010 ORTHO05D006065 3.3e-75 286.6 435 41.8
FAN19G0035 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.3e-74 284.6 404 44.8
CAN.G78.54 Capsicum annuum HOM05D005010 ORTHO05D006065 1.7e-74 284.3 381 45.4
FAN26G0391 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.7e-74 283.1 404 44.8
Oeu058611.3 Olea europaea HOM05D005010 ORTHO05D006065 8.2e-74 282.0 321 49.2
FAN01G2345 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.1e-73 281.6 385 46.2
Lsat_1_v5_gn_4_36200 Lactuca sativa HOM05D005010 ORTHO05D006065 1.1e-73 281.6 399 46.1
FvH4_1g22161 Fragaria vesca HOM05D005010 ORTHO05D006065 1.4e-73 281.2 404 44.3
FAN06G0276 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.4e-73 281.2 363 47.4
FvH4_7g08470 Fragaria vesca HOM05D005010 ORTHO05D006065 1.8e-73 280.8 363 47.4
Sopen01g038310 Solanum pennellii HOM05D005010 ORTHO05D006065 1.8e-73 280.8 356 47.8
PGSC0003DMG400000164 Solanum tuberosum HOM05D005010 ORTHO05D006065 2.4e-73 280.4 356 48.3
FAN03G3376 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.1e-73 280.0 418 44.5
MBI18_g42176_MAGBIO Magnolia biondii HOM05D005010 ORTHO05D006065 9.1e-73 278.5 379 44.9
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 1.5e-72 277.7 447 41.6
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 4.5e-72 276.2 372 43.8
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 5.9e-72 275.8 396 44.7
Gorai.004G042100 Gossypium raimondii HOM05D005010 ORTHO05D006065 7.7e-72 275.4 396 44.7
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 7.7e-72 275.4 366 46.7
DCAR_006924 Daucus carota HOM05D005010 ORTHO05D006065 1.0e-71 275.0 360 46.7
Eucgr.D02284 Eucalyptus grandis HOM05D005010 ORTHO05D006065 1.0e-71 275.0 375 44.5
Solyc01g094500.3 Solanum lycopersicum HOM05D005010 ORTHO05D006065 1.3e-71 274.6 357 47.1
Aqoxy7G00336 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 2.2e-71 273.9 377 44.8
TWI14G0418 Tripterygium wilfordii HOM05D005010 ORTHO05D006065 8.5e-71 271.9 376 44.7
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 1.5e-70 271.2 382 45.5
Glyma.07G071800 Glycine max HOM05D005010 ORTHO05D006065 5.5e-70 269.2 399 42.1
Cpa.g.c27491.2 Carica papaya HOM05D005010 ORTHO05D006065 3.6e-69 266.5 420 42.9
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 8.0e-69 265.4 409 42.8
Lalb_Chr17g0339751 Lupinus albus HOM05D005010 ORTHO05D006065 1.4e-68 264.6 385 41.6
arahy.Tifrunner.gnm1.ann1.L7E1K8 Arachis hypogaea HOM05D005010 ORTHO05D006065 5.2e-68 262.7 326 46.9
TPR.G14634 Trifolium pratense HOM05D005010 ORTHO05D006065 5.2e-68 262.7 362 42.5
COL.COLO4_12702 Corchorus olitorius HOM05D005010 ORTHO05D006065 8.8e-68 261.9 325 47.4
SalBow1G2229 Salvia bowleyana HOM05D005010 ORTHO05D006065 8.8e-68 261.9 354 45.8
MSTRG.17259 Avicennia marina HOM05D005010 ORTHO05D006065 2.0e-67 260.8 370 44.6
AL7G33190 Arabidopsis lyrata HOM05D005010 ORTHO05D006065 3.3e-67 260.0 390 43.3
arahy.Tifrunner.gnm1.ann1.MH5UBF Arachis hypogaea HOM05D005010 ORTHO05D006065 7.4e-67 258.8 339 44.2
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 7.4e-67 258.8 327 45.0
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 1.3e-66 258.1 341 44.9
Sp7g19030 Schrenkiella parvula HOM05D005010 ORTHO05D006065 1.7e-66 257.7 314 48.7
arahy.Tifrunner.gnm1.ann1.99Z3M1 Arachis hypogaea HOM05D005010 ORTHO05D006065 2.2e-66 257.3 321 47.0
BcaC01g00726 Brassica carinata HOM05D005010 ORTHO05D006065 2.8e-66 256.9 314 47.5
Glyma.03G010700 Glycine max HOM05D005010 ORTHO05D006065 1.1e-65 255.0 378 40.7
SalBow6G7245 Salvia bowleyana HOM05D005010 ORTHO05D006065 1.1e-65 255.0 353 44.8
arahy.Tifrunner.gnm1.ann1.23H0YW Arachis hypogaea HOM05D005010 ORTHO05D006065 2.4e-65 253.8 398 41.5
Carub.0007s2048 Capsella rubella HOM05D005010 ORTHO05D006065 3.1e-65 253.4 314 47.8
SGA_v2.0_scaffold4G02331 Striga asiatica HOM05D005010 ORTHO05D006065 4.1e-65 253.1 388 41.2
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 5.3e-65 252.7 390 42.6
Lj4g0008215 Lotus japonicus HOM05D005010 ORTHO05D006065 5.3e-65 252.7 383 41.8
AUR62004345 Chenopodium quinoa HOM05D005010 ORTHO05D006065 7.0e-65 252.3 339 43.1
Psat4g028280 Pisum sativum HOM05D005010 ORTHO05D006065 7.0e-65 252.3 325 45.8
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 9.1e-65 251.9 326 45.1
AT4G20960 Arabidopsis thaliana HOM05D005010 ORTHO05D006065 2.6e-64 250.4 314 46.2
Aa31LG6G3020 Aethionema arabicum HOM05D005010 ORTHO05D006065 3.5e-64 250.0 307 46.9
AUR62022551 Chenopodium quinoa HOM05D005010 ORTHO05D006065 7.7e-64 248.8 339 42.5
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 1.0e-63 248.4 310 45.2
THA.LOC104812937 Tarenaya hassleriana HOM05D005010 ORTHO05D006065 1.0e-63 248.4 322 46.3
EL10Ac1g00427 Beta vulgaris HOM05D005010 ORTHO05D006065 1.3e-63 248.1 345 43.2
A08p15390 Brassica napus HOM05D005010 ORTHO05D006065 2.9e-63 246.9 389 41.6
BraA08t33517Z Brassica rapa HOM05D005010 ORTHO05D006065 5.0e-63 246.1 389 41.6
C03p83660 Brassica napus HOM05D005010 ORTHO05D006065 6.5e-63 245.7 389 41.1
Thhalv10025283m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 6.5e-63 245.7 365 44.7
Phvul.010G097500 Phaseolus vulgaris HOM05D005010 ORTHO05D006065 6.5e-63 245.7 353 40.2
BcaC01g00732 Brassica carinata HOM05D005010 ORTHO05D006065 8.5e-63 245.4 315 46.3
BolC3t20645H Brassica oleracea HOM05D005010 ORTHO05D006065 8.5e-63 245.4 315 46.3
CsaV3_6G000480 Cucumis sativus L. HOM05D005010 ORTHO05D006065 1.2e-61 241.5 371 44.5
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 1.6e-61 241.1 350 39.4
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 2.7e-61 240.4 374 43.0
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 8.0e-61 238.8 369 43.6
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 1.4e-60 238.0 323 44.3
CARHR227510 Cardamine hirsuta HOM05D005010 ORTHO05D006065 1.2e-59 235.0 308 44.5
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 2.0e-59 234.2 348 39.9
C07p51010 Brassica napus HOM05D005010 ORTHO05D006065 2.6e-59 233.8 282 46.8
BcaB03g11707 Brassica carinata HOM05D005010 ORTHO05D006065 9.8e-59 231.9 288 47.9
Migut.B01743 Erythranthe guttata HOM05D005010 ORTHO05D006065 1.7e-58 231.1 329 43.5
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 3.7e-58 229.9 372 39.8
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 1.6e-56 224.6 328 41.2
unitig_749.g13796 Utricularia gibba HOM05D005010 ORTHO05D006065 1.1e-54 218.4 340 40.0
Eucgr.D00187 Eucalyptus grandis HOM05D005010 ORTHO05D006065 4.2e-54 216.5 303 42.9
Aqoxy3G02565 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 1.4e-52 211.5 269 44.6
Rhsim07G0016300 Rhododendron simsii HOM05D005010 ORTHO05D006065 1.4e-52 211.5 180 65.0
Oeu034880.2 Olea europaea HOM05D005010 ORTHO05D006065 8.8e-52 208.8 320 42.2
Os04g0177400 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 2.6e-51 207.2 332 39.8
Zm00001eb001180 Zea mays HOM05D005010 ORTHO05D006065 1.3e-50 204.9 303 41.3
BcaNung05416 Brassica carinata HOM05D005010 ORTHO05D006065 1.7e-50 204.5 259 45.6
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 1.4e-49 201.4 303 41.3
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 1.8e-49 201.1 331 40.2
Actinidia20915 Actinidia chinensis HOM05D005010 ORTHO05D006065 2.0e-48 197.6 287 44.9
ATR0680G350 Amborella trichopoda HOM05D005010 ORTHO05D006065 7.2e-46 189.1 281 42.0
FAN28G0697 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.2e-44 183.0 259 47.5
MD02G1227600 Malus domestica HOM05D005010 ORTHO05D006065 4.4e-43 179.9 195 48.2
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 6.3e-42 176.0 342 37.4
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 4.7e-37 159.8 320 33.8
Gohir.D08G043500 Gossypium hirsutum HOM05D005010 ORTHO05D006065 6.1e-37 159.5 231 43.3
BolC7t45602H Brassica oleracea HOM05D005010 ORTHO05D006065 6.8e-36 156.0 187 48.1
HanXRQChr16g0522791 Helianthus annuus HOM05D005010 ORTHO05D006065 7.0e-33 146.0 216 44.4
Lalb_Chr04g0256901 Lupinus albus HOM05D005010 ORTHO05D006065 2.0e-32 144.4 167 43.1
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 1.0e-31 142.1 319 32.6
FAN03G2591 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.9e-31 140.2 142 57.0
FAN03G3310 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.9e-31 140.2 142 57.0
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 6.6e-31 139.4 348 29.0
BraA03t14331Z Brassica rapa HOM05D005010 ORTHO05D006065 9.5e-30 135.6 144 50.0
Ciclev10013015m.g Citrus clementina HOM05D005010 ORTHO05D006065 4.7e-29 133.3 102 67.6
SEGI_16261 Sequoiadendron giganteum HOM05D005010 ORTHO05D006065 2.0e-27 127.9 100 63.0
Potri.014G083000 Populus trichocarpa HOM05D005010 ORTHO05D006065 1.9e-25 121.3 194 40.2
MD02G1227800 Malus domestica HOM05D005010 ORTHO05D006065 2.5e-22 110.9 128 52.3
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 9.5e-22 109.0 200 33.0
arahy.Tifrunner.gnm1.ann1.J3VGT8 Arachis hypogaea HOM05D005010 ORTHO05D006065 1.6e-21 108.2 187 38.0
BcaNung05412 Brassica carinata HOM05D005010 ORTHO05D006065 4.0e-20 103.6 180 40.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.2e-16 92.0 103 43.7
MCO15G184 Micromonas commoda HOM05D005010 ORTHO05D006065 8.6e-15 85.9 103 45.6
Thhalv10026822m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 1.1e-14 85.5 81 56.8
PRCOL_00002917 Prasinoderma coloniale HOM05D005010 ORTHO05D006065 3.6e-13 80.5 154 35.1
BcaB06g27372 Brassica carinata HOM05D005010 ORTHO05D006065 4.0e-12 77.0 41 75.6
Lalb_Chr04g0256911 Lupinus albus HOM05D005010 ORTHO05D006065 3.4e-11 73.9 69 56.5
A03p52560 Brassica napus HOM05D005010 ORTHO05D006065 4.4e-11 73.6 39 79.5
HPP92_013926 Vanilla planifolia HOM05D005010 ORTHO05D006065 1.9e-09 68.2 55 61.8
HPP92_014013 Vanilla planifolia HOM05D005010 ORTHO05D006065 3.2e-09 67.4 55 61.8
FAN10G3940 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.0e-07 60.8 42 71.4
A03p52570 Brassica napus HOM05D005010 ORTHO05D006065 7.3e-06 56.2 70 42.9


User provided reference genes

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