Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14539 Vaccinium macrocarpon HOM05D000475 ORTHO05D000343 1.0e-165 587.0 377 100.0
Rhsim01G0229100 Rhododendron simsii HOM05D000475 ORTHO05D000343 2.8e-91 339.7 435 58.6
CSS0039094 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 4.4e-52 209.5 339 44.0
CSS0003311 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 1.7e-48 197.6 348 45.7
Actinidia07029 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.7e-43 181.0 381 40.7
Dinv17014 Davidia involucrata HOM05D000475 ORTHO05D000343 3.1e-42 176.8 382 39.0
Dinv42963 Davidia involucrata HOM05D000475 ORTHO05D000343 3.1e-42 176.8 382 39.0
Dinv43136 Davidia involucrata HOM05D000475 ORTHO05D000343 3.1e-42 176.8 382 39.0
Hma1.2p1_0615F.1_g189900 Hydrangea macrophylla HOM05D000475 ORTHO05D000343 2.1e-38 164.1 377 37.4
Cfa011514 Carpinus fangiana HOM05D000475 ORTHO05D000343 1.0e-37 161.8 351 36.5
Actinidia37197 Actinidia chinensis HOM05D000475 ORTHO05D000343 1.8e-37 161.0 341 40.8
TAR636G2035 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.2e-36 158.3 321 41.1
CiPaw.13G093100 Carya illinoinensis HOM05D000475 ORTHO05D000343 9.2e-34 148.7 344 34.0
TAR633G1839 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.5e-31 141.4 340 35.3
Haze_24109 Corylus avellana HOM05D000475 ORTHO05D034904 1.6e-30 137.9 253 39.9
Dinv04176 Davidia involucrata HOM05D000475 ORTHO05D000343 1.6e-30 137.9 263 43.0
Hund18900 Selenicereus undatus HOM05D000475 ORTHO05D000343 4.7e-30 136.3 363 33.6
MBI05_g28383_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 5.2e-29 132.9 356 35.4
DCAR_005966 Daucus carota HOM05D000475 ORTHO05D000343 2.9e-27 127.1 360 35.6
QL01p031578 Quercus lobata HOM05D000475 ORTHO05D000343 4.9e-27 126.3 351 33.3
Cc01_g12980 Coffea canephora HOM05D000475 ORTHO05D000343 4.1e-26 123.2 356 32.0
Migut.D02086 Erythranthe guttata HOM05D000475 ORTHO05D000343 4.1e-26 123.2 153 45.8
Aqoxy2G02215 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 5.4e-26 122.9 352 36.1
GSVIVG01024945001 Vitis vinifera HOM05D000475 ORTHO05D000343 7.0e-26 122.5 213 39.4
SGA_v2.0_scaffold203G41532 Striga asiatica HOM05D000475 ORTHO05D000343 2.0e-25 120.9 150 48.7
Manes.02G131800 Manihot esculenta HOM05D000475 ORTHO05D000343 4.6e-25 119.8 358 34.1
Ciclev10027878m.g Citrus clementina HOM05D000475 ORTHO05D000343 1.5e-23 114.8 153 44.4
Atru.chr3.3942 Acer truncatum HOM05D000475 ORTHO05D000343 4.3e-23 113.2 357 35.0
MSTRG.21214 Avicennia marina HOM05D000475 ORTHO05D000343 9.5e-23 112.1 273 32.2
SGA_v2.0_scaffold41G15694 Striga asiatica HOM05D000475 ORTHO05D000343 1.1e-21 108.6 140 43.6
Ah.15g097520 Amaranthus hybridus HOM05D000475 ORTHO05D000343 1.4e-21 108.2 143 43.4
AUR62001775 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.4e-21 108.2 151 39.7
AUR62009563 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.8e-21 107.8 151 39.7
ATR0559G058 Amborella trichopoda HOM05D000475 ORTHO05D000343 4.0e-21 106.7 314 32.5
ECA236G2884 Erigeron canadensis HOM05D000475 ORTHO05D000343 5.2e-21 106.3 343 32.7
EL10Ac7g16030 Beta vulgaris HOM05D000475 ORTHO05D000343 6.8e-21 105.9 143 42.0
CAN.G632.5 Capsicum annuum HOM05D000475 ORTHO05D000343 8.9e-21 105.5 203 36.5
HanXRQChr17g0551461 Helianthus annuus HOM05D000475 ORTHO05D000343 1.2e-20 105.1 151 43.0
ECA248G2685 Erigeron canadensis HOM05D000475 ORTHO05D000343 9.8e-20 102.1 151 40.4
Nitab4.5_0003943g0010 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.3e-19 101.7 401 31.7
PGSC0003DMG400030416 Solanum tuberosum HOM05D019137 ORTHO05D025929 1.3e-19 101.7 345 29.6
Lsat_1_v5_gn_5_170020 Lactuca sativa HOM05D000475 ORTHO05D000343 1.7e-19 101.3 343 32.9
Peaxi162Scf00216g00027 Petunia axillaris HOM05D000475 ORTHO05D000343 1.7e-19 101.3 360 33.9
Ah.08g217970 Amaranthus hybridus HOM05D000475 ORTHO05D000343 8.3e-19 99.0 145 41.4
Solyc06g005570.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 8.3e-19 99.0 198 34.8
Nitab4.5_0000272g0100 Nicotiana tabacum HOM05D000475 ORTHO05D000343 1.1e-18 98.6 396 32.1
Sopen06g001530 Solanum pennellii HOM05D000475 ORTHO05D000343 1.1e-18 98.6 198 34.8
Lsat_1_v5_gn_5_170140 Lactuca sativa HOM05D000475 ORTHO05D000343 1.9e-18 97.8 267 31.8
HPP92_019834 Vanilla planifolia HOM05D000475 ORTHO05D000343 4.1e-18 96.7 138 41.3
Nitab4.5_0000463g0170 Nicotiana tabacum HOM05D019137 ORTHO05D000343 1.3e-16 91.7 154 39.0
CDE04G0323 Ceratophyllum demersum HOM05D000475 ORTHO05D000343 1.7e-16 91.3 143 37.8
CDE07G0312 Ceratophyllum demersum HOM05D000475 ORTHO05D000343 1.2e-14 85.1 138 37.0
Nitab4.5_0001326g0140 Nicotiana tabacum HOM05D019137 ORTHO05D025929 4.7e-14 83.2 118 41.5
unitig_746.g26736 Utricularia gibba HOM05D000475 ORTHO05D000343 1.5e-12 78.2 197 33.0
Haze_04274 Corylus avellana HOM05D000475 ORTHO05D000343 3.8e-11 73.6 151 33.1
Atru.chr2.595 Acer truncatum HOM05D000475 ORTHO05D000343 3.2e-10 70.5 134 35.1
CSS0016650 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 7.1e-10 69.3 143 33.6
SEGI_25178 Sequoiadendron giganteum HOM05D000475 ORTHO05D000343 9.2e-10 68.9 139 33.8
Dinv12934 Davidia involucrata HOM05D000475 ORTHO05D000343 1.2e-09 68.6 134 34.3
SHI05927 Sapria himalayana HOM05D000475 ORTHO05D000343 1.2e-09 68.6 126 34.9
TAR636G1829 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.6e-09 68.2 40 75.0
Dinv01782 Davidia involucrata HOM05D000475 ORTHO05D000343 2.1e-09 67.8 134 34.3
MD04G1213400 Malus domestica HOM05D000475 ORTHO05D000343 2.1e-09 67.8 134 33.6
Rhsim08G0039000 Rhododendron simsii HOM05D002681 ORTHO05D000343 2.1e-09 67.8 134 30.6
Sed0027027 Sechium edule HOM05D000475 ORTHO05D000343 2.1e-09 67.8 213 28.6
MBI10_g42799_MAGBIO Magnolia biondii HOM05D000475 ORTHO05D000343 2.7e-09 67.4 134 33.6
Thecc.05G250600 Theobroma cacao HOM05D000475 ORTHO05D000343 2.7e-09 67.4 134 33.6
MELO3C004333.2 Cucumis melo HOM05D000475 ORTHO05D000343 3.5e-09 67.0 134 32.1
CsaV3_2G004580 Cucumis sativus L. HOM05D000475 ORTHO05D000343 3.5e-09 67.0 134 32.1
CsaV3_2G004710 Cucumis sativus L. HOM05D000475 ORTHO05D000343 3.5e-09 67.0 134 32.1
Gohir.D13G168900 Gossypium hirsutum HOM05D000475 ORTHO05D000343 3.5e-09 67.0 134 32.8
Gorai.013G193000 Gossypium raimondii HOM05D000475 ORTHO05D000343 3.5e-09 67.0 134 32.8
Sc17g0003600 Simmondsia chinensis HOM05D000475 ORTHO05D000343 4.6e-09 66.6 135 36.3
ClCG02G016200 Citrullus lanatus HOM05D000475 ORTHO05D000343 6.0e-09 66.2 134 32.1
Gorai.013G116000 Gossypium raimondii HOM05D000475 ORTHO05D000343 7.8e-09 65.9 134 32.8
COL.COLO4_36075 Corchorus olitorius HOM05D000475 ORTHO05D000343 1.3e-08 65.1 134 32.8
MD12G1228500 Malus domestica HOM05D000475 ORTHO05D000343 1.3e-08 65.1 134 32.8
Duzib128G1338 Durio zibethinus HOM05D001469 ORTHO05D001648 1.7e-08 64.7 134 32.1
Gohir.A13G166000 Gossypium hirsutum HOM05D000475 ORTHO05D000343 1.7e-08 64.7 134 32.1
TPR.G18610 Trifolium pratense HOM05D000475 ORTHO05D000343 1.7e-08 64.7 134 32.1
ATR0706G275 Amborella trichopoda HOM05D000475 ORTHO05D000343 2.3e-08 64.3 134 31.3
TWI12G0532 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 2.3e-08 64.3 140 31.4
Glyma.06G309900 Glycine max HOM05D000475 ORTHO05D000343 3.0e-08 63.9 134 31.3
Actinidia05742 Actinidia chinensis HOM05D000475 ORTHO05D000343 3.9e-08 63.5 134 32.8
Dinv03767 Davidia involucrata HOM05D000475 ORTHO05D000343 3.9e-08 63.5 134 33.6
Medtr3g012490 Medicago truncatula HOM05D000475 ORTHO05D000343 3.9e-08 63.5 134 31.3
Oeu022273.1 Olea europaea HOM05D000475 ORTHO05D000343 3.9e-08 63.5 41 70.7
Cfa006512 Carpinus fangiana HOM05D000475 ORTHO05D000343 5.1e-08 63.2 134 32.1
Dinv12937 Davidia involucrata HOM05D000475 ORTHO05D000343 5.1e-08 63.2 134 32.8
Gohir.D13G103400 Gossypium hirsutum HOM05D000475 ORTHO05D000343 5.1e-08 63.2 134 32.8
TWI36G1231 Tripterygium wilfordii HOM05D001469 ORTHO05D001648 5.1e-08 63.2 134 32.1
GSVIVG01021983001 Vitis vinifera HOM05D000475 ORTHO05D000343 5.1e-08 63.2 143 32.2
Phvul.005G016600 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 6.6e-08 62.8 134 29.9
Psat5g223520 Pisum sativum HOM05D000475 ORTHO05D000343 6.6e-08 62.8 134 31.3
Sed0015527 Sechium edule HOM05D000475 ORTHO05D000343 6.6e-08 62.8 134 31.3
arahy.Tifrunner.gnm1.ann1.RFJL13 Arachis hypogaea HOM05D000475 ORTHO05D000343 8.6e-08 62.4 134 31.3
arahy.Tifrunner.gnm1.ann1.YUJY33 Arachis hypogaea HOM05D000475 ORTHO05D000343 8.6e-08 62.4 134 31.3
Peaxi162Scf00207g00142 Petunia axillaris HOM05D000475 ORTHO05D000343 8.6e-08 62.4 135 29.6
Prupe.6G333600 Prunus persica HOM05D000475 ORTHO05D000343 1.1e-07 62.0 134 31.3
VMungo1080G0999 Vigna mungo HOM05D000475 ORTHO05D000343 1.5e-07 61.6 134 29.9
VMungo1215G0339 Vigna mungo HOM05D000475 ORTHO05D000343 1.5e-07 61.6 134 30.6
Lj3g0023474 Lotus japonicus HOM05D000475 ORTHO05D000343 1.9e-07 61.2 152 27.6
ClCG09G008340 Citrullus lanatus HOM05D001772 ORTHO05D002266 2.5e-07 60.8 134 30.6
Lalb_Chr15g0079191 Lupinus albus HOM05D000475 ORTHO05D000343 2.5e-07 60.8 134 30.6
Actinidia30903 Actinidia chinensis HOM05D000475 ORTHO05D000343 3.3e-07 60.5 77 46.8
AL4G28430 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 3.3e-07 60.5 86 41.9
Ciclev10000711m.g Citrus clementina HOM05D000475 ORTHO05D000343 3.3e-07 60.5 134 31.3
Lj5A680G19 Lonicera japonica HOM05D000475 ORTHO05D000343 3.3e-07 60.5 134 32.1
Nn3g21256 Nelumbo nucifera HOM05D000475 ORTHO05D000343 3.3e-07 60.5 134 32.8
Sabra13G0029500 Salix brachista HOM05D000475 ORTHO05D000343 3.3e-07 60.5 134 31.3
Oeu004158.1 Olea europaea HOM05D064777 ORTHO05D034904 4.3e-07 60.1 47 57.4
BcaB07g31098 Brassica carinata HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
A09p19420 Brassica napus HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
C09p24440 Brassica napus HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
C09p24480 Brassica napus HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
BolC9t55359H Brassica oleracea HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
BolC9t55364H Brassica oleracea HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
BraA09t37558Z Brassica rapa HOM05D000475 ORTHO05D000343 5.6e-07 59.7 86 40.7
AUR62036659 Chenopodium quinoa HOM05D000475 ORTHO05D000343 5.6e-07 59.7 135 31.9
Ciclev10000685m.g Citrus clementina HOM05D000475 ORTHO05D000343 5.6e-07 59.7 134 31.3
Dinv11294 Davidia involucrata HOM05D000475 ORTHO05D000343 5.6e-07 59.7 135 34.1
Glyma.04G122400 Glycine max HOM05D000475 ORTHO05D000343 5.6e-07 59.7 134 29.1
Manes.08G125011 Manihot esculenta HOM05D001469 ORTHO05D001648 5.6e-07 59.7 134 29.9
Nn2g13362 Nelumbo nucifera HOM05D000475 ORTHO05D000343 5.6e-07 59.7 36 80.6
SEGI_12390 Sequoiadendron giganteum HOM05D000475 ORTHO05D000343 5.6e-07 59.7 134 29.1
CANSAT54G2330 Cannabis sativa HOM05D000475 ORTHO05D000343 7.3e-07 59.3 134 31.3
SalBow3G1693 Salvia bowleyana HOM05D000475 ORTHO05D000343 7.3e-07 59.3 28 92.9
SEGI_36381 Sequoiadendron giganteum HOM05D000475 ORTHO05D000343 7.3e-07 59.3 136 32.4
Thhalv10023283m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 9.6e-07 58.9 47 59.6
Glyma.06G309600 Glycine max HOM05D000475 ORTHO05D000343 9.6e-07 58.9 134 29.1
Potri.013G029200 Populus trichocarpa HOM05D000475 ORTHO05D000343 9.6e-07 58.9 134 30.6
ATR0582G330 Amborella trichopoda HOM05D000475 ORTHO05D000343 1.2e-06 58.5 134 29.9
BcaC04g22025 Brassica carinata HOM05D000475 ORTHO05D000343 1.2e-06 58.5 47 57.4
AUR62034609 Chenopodium quinoa HOM05D000475 ORTHO05D000343 1.2e-06 58.5 135 31.1
Lalb_Chr19g0126291 Lupinus albus HOM05D000475 ORTHO05D000343 1.2e-06 58.5 134 29.9
Medtr3g012500 Medicago truncatula HOM05D000475 ORTHO05D000343 1.2e-06 58.5 134 29.1
Potri.005G042700 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.2e-06 58.5 134 30.6
Potri.005G043100 Populus trichocarpa HOM05D000475 ORTHO05D000343 1.2e-06 58.5 134 30.6
Rhsim07G0177300 Rhododendron simsii HOM05D000475 ORTHO05D000343 1.2e-06 58.5 134 29.9
Sabra05G0040100 Salix brachista HOM05D000160 ORTHO05D000914 1.2e-06 58.5 134 32.1
SpUn0002_0100 Schrenkiella parvula HOM05D000475 ORTHO05D000343 1.2e-06 58.5 86 40.7
Carub.0004s1434 Capsella rubella HOM05D000475 ORTHO05D000343 1.6e-06 58.2 134 29.1
CiPaw.07G012000 Carya illinoinensis HOM05D000475 ORTHO05D000343 1.6e-06 58.2 134 29.9
Dinv11296 Davidia involucrata HOM05D000475 ORTHO05D000343 1.6e-06 58.2 135 33.3
Phvul.003G041800 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 1.6e-06 58.2 134 29.9
RcHm_v2.0_Chr3g0453261 Rosa chinensis HOM05D000475 ORTHO05D000343 1.6e-06 58.2 210 26.2
TAR374G0817 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.6e-06 58.2 134 28.4
TAR622G0630 Trochodendron aralioides HOM05D000475 ORTHO05D000343 1.6e-06 58.2 134 29.1
AT2G32910 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 2.1e-06 57.8 86 41.9
FAN05G1933 Fragaria x ananassa HOM05D000475 ORTHO05D000343 2.1e-06 57.8 144 30.6
FAN05G3336 Fragaria x ananassa HOM05D000475 ORTHO05D000343 2.1e-06 57.8 144 30.6
Glyma.04G122200 Glycine max HOM05D000475 ORTHO05D000343 2.1e-06 57.8 134 29.1
Prupe.1G215000 Prunus persica HOM05D000475 ORTHO05D000343 2.1e-06 57.8 134 29.1
CSS0036506 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D000343 2.8e-06 57.4 135 32.6
FvH4_6g04800 Fragaria vesca HOM05D000475 ORTHO05D000343 2.8e-06 57.4 144 30.6
FAN02G3545 Fragaria x ananassa HOM05D000475 ORTHO05D000343 2.8e-06 57.4 144 30.6
FAN14G3550 Fragaria x ananassa HOM05D000475 ORTHO05D000343 2.8e-06 57.4 144 30.6
Lj3g0015507 Lotus japonicus HOM05D000475 ORTHO05D000343 2.8e-06 57.4 134 28.4
PSO675G2662 Papaver somniferum HOM05D000475 ORTHO05D000343 2.8e-06 57.4 140 30.7
FAN09G0557 Fragaria x ananassa HOM05D000475 ORTHO05D000343 3.6e-06 57.0 135 31.1
FAN09G1137 Fragaria x ananassa HOM05D000475 ORTHO05D000343 3.6e-06 57.0 135 31.1
MD00G1177300 Malus domestica HOM05D000475 ORTHO05D000343 3.6e-06 57.0 134 29.1
SEGI_22052 Sequoiadendron giganteum HOM05D000475 ORTHO05D000343 3.6e-06 57.0 137 29.9
Ca_14233_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 4.7e-06 56.6 47 57.4
Ca_30546_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 4.7e-06 56.6 47 57.4
Psat5g223480 Pisum sativum HOM05D000475 ORTHO05D000343 4.7e-06 56.6 134 29.1
Sabra01G0105500 Salix brachista HOM05D000475 ORTHO05D000343 4.7e-06 56.6 134 29.9
Sc12g0001480 Simmondsia chinensis HOM05D000475 ORTHO05D000343 4.7e-06 56.6 33 75.8
Cc01_g20170 Coffea canephora HOM05D000475 ORTHO05D000343 8.1e-06 55.8 135 31.1
Phvul.006G019411 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 8.1e-06 55.8 47 55.3
Potri.001G136300 Populus trichocarpa HOM05D000475 ORTHO05D000343 8.1e-06 55.8 134 29.9


User provided reference genes

Program Settings