Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 0.0e+00 1463.4 739 100.0
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 9.0e-251 870.5 679 70.8
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 9.4e-200 701.0 678 59.4
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.1e-176 624.4 648 56.5
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 2.0e-149 533.9 678 49.0
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 2.7e-138 496.9 718 45.3
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 3.9e-137 493.0 679 45.4
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.5e-133 481.1 663 45.1
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.1e-131 474.9 676 45.0
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 5.4e-131 472.6 676 44.8
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 1.2e-122 444.9 673 44.0
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 2.1e-122 444.1 690 42.8
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 7.9e-122 442.2 680 43.4
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.5e-117 427.9 656 43.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.5e-117 427.9 555 47.6
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.0e-116 425.2 701 41.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.2e-116 424.1 552 47.8
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 4.9e-116 422.9 629 42.9
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 8.4e-116 422.2 705 40.6
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 5.5e-115 419.5 721 39.8
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 2.7e-114 417.2 644 43.9
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 2.7e-114 417.2 593 44.7
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 3.0e-113 413.7 576 47.0
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 1.1e-112 411.8 675 41.2
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 9.6e-112 408.7 680 40.9
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 6.3e-111 406.0 685 39.7
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 6.3e-111 406.0 667 41.5
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.1e-110 405.2 685 39.6
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.1e-110 405.2 706 39.7
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 3.1e-110 403.7 386 58.3
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 4.1e-110 403.3 544 48.0
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.5e-109 401.4 631 41.8
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.5e-109 399.8 434 54.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.4e-107 394.8 510 48.4
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 1.2e-106 391.7 705 40.3
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 3.5e-106 390.2 701 41.4
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 2.5e-104 384.0 609 42.4
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 4.3e-104 383.3 449 49.9
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 5.7e-104 382.9 422 51.4
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 5.7e-104 382.9 626 40.3
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 9.7e-104 382.1 599 43.7
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 2.8e-103 380.6 501 46.9
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 4.8e-103 379.8 501 47.3
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 4.8e-103 379.8 397 54.4
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.3e-103 379.4 702 38.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 8.2e-103 379.0 543 45.9
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 1.1e-102 378.6 441 50.1
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.1e-102 376.7 495 46.7
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 9.0e-102 375.6 497 46.5
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.6e-101 374.0 498 47.4
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 5.9e-101 372.9 382 54.5
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.9e-101 372.9 496 46.2
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 5.0e-100 369.8 673 40.3
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.0e-100 369.8 540 45.2
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 6.5e-100 369.4 690 38.8
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 6.5e-100 369.4 403 52.1
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 8.5e-100 369.0 403 52.1
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.2e-98 365.2 539 43.6
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 2.7e-98 364.0 504 45.6
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 2.7e-98 364.0 556 41.9
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 1.4e-97 361.7 425 50.8
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 1.8e-97 361.3 489 45.8
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 2.3e-97 360.9 572 42.0
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 8.8e-97 359.0 393 51.4
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.3e-95 355.1 660 37.0
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.7e-95 354.8 386 52.8
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 2.8e-95 354.0 517 43.9
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 5.3e-94 349.7 398 50.8
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 5.3e-94 349.7 680 37.5
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.5e-93 348.2 385 51.4
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 2.0e-93 347.8 462 47.2
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 7.7e-93 345.9 456 46.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.0e-92 345.5 501 43.9
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 2.9e-92 344.0 385 51.4
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 6.5e-92 342.8 481 45.3
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 8.5e-92 342.4 653 36.6
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 5.5e-91 339.7 383 51.2
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.1e-90 337.8 400 49.2
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 4.7e-90 336.7 436 45.2
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 6.1e-90 336.3 486 44.2
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 7.9e-90 335.9 624 38.0
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 1.4e-89 335.1 383 50.4
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.3e-89 334.3 379 50.1
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.1e-88 332.0 329 55.0
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 4.4e-88 330.1 321 55.8
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 2.2e-87 327.8 333 53.8
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 3.7e-87 327.0 755 35.6
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.1e-86 325.5 329 54.1
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 1.5e-83 315.1 529 41.2
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 2.5e-83 314.3 402 47.0
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 4.2e-83 313.5 354 51.1
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 5.5e-83 313.2 703 34.7
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 5.5e-83 313.2 703 34.7
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.1e-82 311.2 566 38.2
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 4.7e-82 310.1 394 49.0
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 6.1e-82 309.7 697 34.7
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 5.2e-81 306.6 405 46.4
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 5.2e-81 306.6 405 46.4
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 8.8e-81 305.8 405 46.4
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 7.5e-80 302.8 461 42.3
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 9.7e-80 302.4 454 44.3
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 8.2e-79 299.3 432 43.1
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.1e-78 298.9 461 42.7
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 2.0e-77 294.7 432 42.6
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 3.5e-77 293.9 465 42.6
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 2.5e-75 287.7 203 70.9
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.6e-69 268.5 288 52.8
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 3.5e-69 267.3 444 37.6
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 8.0e-66 256.1 444 36.9
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 4.1e-62 243.8 199 62.3
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.1e-54 219.2 363 35.5
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 3.0e-52 211.1 327 41.3
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.1e-51 209.1 564 31.6
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.8e-49 201.8 315 36.2
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 6.8e-49 199.9 395 36.2
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 9.8e-48 196.1 244 44.3
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 7.1e-38 163.3 142 57.0
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.6e-34 152.1 320 38.8
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 6.6e-28 130.2 127 57.5
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 6.9e-25 120.2 208 41.3
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.6e-24 118.2 123 57.7
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 2.7e-21 108.2 130 52.3
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 3.9e-20 104.4 88 58.0
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 3.9e-20 104.4 171 35.1
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 6.9e-17 93.6 328 24.7
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 4.5e-16 90.9 193 35.8
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.7e-15 89.0 76 57.9
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 9.3e-14 83.2 279 26.2
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 3.5e-13 81.3 61 60.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.3e-12 79.3 54 70.4
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 5.1e-12 77.4 59 64.4
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 5.1e-12 77.4 59 64.4
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.4e-06 59.3 83 44.6
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 7.1e-06 57.0 243 25.1


User provided reference genes

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