Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.1e-148 528.1 278 100.0
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 6.6e-98 361.3 267 78.7
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.1e-68 264.2 274 60.2
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 5.0e-61 238.8 268 55.6
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.0e-58 231.1 287 53.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 2.6e-54 216.5 284 49.3
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 8.5e-53 211.5 287 46.7
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 3.0e-50 203.0 287 43.6
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 5.7e-49 198.7 293 46.1
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 6.3e-48 195.3 283 45.2
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 8.2e-48 194.9 279 43.0
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.1e-47 194.5 280 46.8
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 3.5e-46 189.5 265 45.7
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.3e-45 187.6 209 56.0
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 8.5e-45 184.9 280 46.1
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 7.2e-44 181.8 249 50.6
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.2e-43 181.0 272 46.0
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.6e-43 180.6 267 44.6
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 8.0e-43 178.3 282 45.0
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.0e-42 177.9 272 44.5
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.2e-41 174.5 246 47.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 2.6e-41 173.3 255 45.5
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 3.7e-40 169.5 262 45.0
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 3.1e-39 166.4 276 42.0
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 4.1e-39 166.0 234 47.4
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.1e-39 166.0 269 43.1
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.6e-38 164.1 243 44.4
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 4.5e-38 162.5 268 42.5
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.0e-37 161.4 244 44.3
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.7e-37 160.6 277 41.9
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 3.8e-37 159.5 256 44.9
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.1e-36 157.9 268 41.8
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 9.4e-36 154.8 248 43.5
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.2e-35 154.5 280 41.4
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 8.0e-35 151.8 328 35.1
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.8e-34 150.6 270 37.8
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.3e-34 150.2 253 43.9
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 2.0e-33 147.1 260 40.8
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 2.6e-33 146.7 224 40.2
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 7.5e-33 145.2 142 58.5
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.3e-32 144.4 142 58.5
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.8e-32 143.3 114 57.9
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 4.8e-32 142.5 211 43.6
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 4.1e-31 139.4 218 45.0
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 8.0e-27 125.2 90 64.4
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 9.8e-25 118.2 114 51.8
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 3.7e-24 116.3 260 34.6
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 3.5e-22 109.8 97 62.9
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 1.7e-21 107.5 116 48.3
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 1.8e-18 97.4 270 33.3
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 4.0e-18 96.3 105 51.4
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 8.3e-16 88.6 130 41.5
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.2e-15 86.7 255 34.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.3e-12 76.3 91 42.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.3e-12 76.3 91 41.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.5e-12 75.1 91 40.7
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.2e-11 74.7 91 39.6
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 8.0e-11 72.0 76 44.7
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.4e-10 71.2 149 32.2
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.8e-10 70.9 113 36.3
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.8e-10 70.9 85 45.9
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.8e-10 70.9 197 28.4
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.1e-10 70.1 89 41.6
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.1e-10 70.1 103 38.8
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 4.0e-10 69.7 91 36.3
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 4.0e-10 69.7 95 38.9
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 8.9e-10 68.6 85 40.0
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 8.9e-10 68.6 103 37.9
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 8.9e-10 68.6 77 45.5
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.2e-09 68.2 76 39.5
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.2e-09 68.2 109 36.7
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.2e-09 68.2 122 34.4
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.0e-09 67.4 71 46.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.0e-09 67.4 77 40.3
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.0e-09 67.4 139 29.5
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.0e-09 67.4 122 33.6
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 2.6e-09 67.0 78 41.0
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.6e-09 67.0 83 36.1
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 2.6e-09 67.0 87 41.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.6e-09 67.0 113 34.5
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 3.4e-09 66.6 91 35.2
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.4e-09 66.6 81 38.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 4.4e-09 66.2 113 34.5
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-09 66.2 71 46.5
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 5.8e-09 65.9 92 38.0
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 5.8e-09 65.9 163 33.1
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.8e-09 65.9 72 45.8
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 7.5e-09 65.5 60 50.0
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 7.5e-09 65.5 108 36.1
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 9.8e-09 65.1 178 29.8
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.3e-08 64.7 198 30.8
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.7e-08 64.3 74 40.5
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.7e-08 64.3 92 35.9
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.7e-08 64.3 106 34.0
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.2e-08 63.9 118 32.2
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.2e-08 63.9 118 32.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 2.9e-08 63.5 112 35.7
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 2.9e-08 63.5 212 29.7
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.7e-08 63.2 84 34.5
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 3.7e-08 63.2 96 35.4
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.9e-08 62.8 89 38.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 4.9e-08 62.8 169 32.5
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 6.4e-08 62.4 204 29.9
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 6.4e-08 62.4 130 30.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 6.4e-08 62.4 130 30.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 6.4e-08 62.4 130 30.8
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 6.4e-08 62.4 190 30.0
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.4e-08 62.4 112 33.0
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.4e-08 62.4 244 27.5
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 6.4e-08 62.4 96 36.5
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 8.3e-08 62.0 186 29.6
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 8.3e-08 62.0 101 35.6
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.1e-07 61.6 81 40.7
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-07 61.6 176 30.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.4e-07 61.2 164 30.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.9e-07 60.8 147 32.0
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.9e-07 60.8 175 28.0
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.9e-07 60.8 71 46.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.9e-07 60.8 185 29.2
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.4e-07 60.5 204 29.4
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.4e-07 60.5 194 30.9
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 2.4e-07 60.5 183 33.3
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.4e-07 60.5 140 31.4
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.4e-07 60.5 256 27.7
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.4e-07 60.5 208 27.9
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.2e-07 60.1 190 26.8
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 3.2e-07 60.1 119 31.1
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.1e-07 59.7 191 30.4
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 4.1e-07 59.7 176 29.5
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 4.1e-07 59.7 176 27.3
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 4.1e-07 59.7 173 28.3
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 4.1e-07 59.7 232 25.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 5.4e-07 59.3 77 39.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.1e-07 58.9 137 29.9
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 7.1e-07 58.9 183 26.8
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 7.1e-07 58.9 225 26.7
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 9.2e-07 58.5 111 34.2
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 9.2e-07 58.5 138 31.9
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 9.2e-07 58.5 173 28.3
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 9.2e-07 58.5 177 29.4
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 9.2e-07 58.5 187 32.6
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 9.2e-07 58.5 98 30.6
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.6e-06 57.8 216 27.3
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.1e-06 57.4 183 29.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.1e-06 57.4 212 28.3
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.1e-06 57.4 172 28.5
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.1e-06 57.4 75 40.0
CSS0036166 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 3.5e-06 56.6 59 55.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 3.5e-06 56.6 216 26.9
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.5e-06 56.6 57 42.1
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.6e-06 56.2 191 29.8
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 4.6e-06 56.2 181 29.8
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 4.6e-06 56.2 215 29.8
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 6.0e-06 55.8 212 26.9
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 6.0e-06 55.8 182 28.6
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.0e-06 55.8 184 29.3
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 7.8e-06 55.5 179 30.2
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.8e-06 55.5 179 30.2


User provided reference genes

Program Settings