Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14308 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 8.3e-126 453.8 236 100.0
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 1.4e-75 287.0 252 62.7
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 9.4e-61 237.7 245 57.6
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 5.7e-58 228.4 251 54.6
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 6.5e-54 214.9 254 51.6
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 1.9e-53 213.4 263 50.6
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 4.0e-51 205.7 248 49.6
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.0e-50 203.4 250 50.4
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.3e-49 200.7 251 49.0
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.7e-49 199.1 250 48.8
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 2.7e-47 193.0 251 47.0
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 1.3e-46 190.7 251 49.4
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 2.2e-46 189.9 252 45.6
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 8.5e-46 188.0 250 46.8
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 1.1e-45 187.6 251 47.8
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 2.5e-45 186.4 253 47.8
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 4.2e-45 185.7 249 45.8
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 5.5e-45 185.3 252 45.2
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 5.2e-43 178.7 247 48.2
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 6.8e-43 178.3 248 44.0
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 6.8e-43 178.3 248 44.4
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 8.8e-43 177.9 250 44.0
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 1.7e-41 173.7 252 43.7
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 2.8e-41 172.9 255 44.7
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 2.8e-41 172.9 264 42.8
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 6.3e-41 171.8 295 39.0
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 8.3e-41 171.4 250 45.2
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 1.1e-40 171.0 248 44.4
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 3.1e-40 169.5 247 43.7
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 1.2e-39 167.5 248 43.5
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 2.0e-39 166.8 303 37.6
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 3.5e-39 166.0 254 41.7
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 3.5e-39 166.0 239 43.9
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 3.5e-39 166.0 247 40.9
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 4.5e-39 165.6 248 44.4
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 4.5e-39 165.6 252 42.1
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 5.9e-39 165.2 251 43.0
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 5.9e-39 165.2 249 45.0
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 1.0e-38 164.5 255 42.0
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 1.3e-38 164.1 249 43.0
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 3.8e-38 162.5 249 44.2
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 3.8e-38 162.5 249 44.2
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 5.0e-38 162.2 253 43.9
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 6.6e-38 161.8 248 41.5
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 1.6e-36 157.1 257 41.2
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 2.1e-36 156.8 248 40.7
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 2.8e-36 156.4 252 43.7
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 8.0e-36 154.8 237 41.8
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 1.4e-35 154.1 249 39.4
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 1.8e-35 153.7 263 38.8
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 1.5e-34 150.6 251 39.8
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 1.5e-34 150.6 208 44.7
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 2.0e-34 150.2 248 42.7
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 7.5e-34 148.3 255 42.0
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 7.5e-34 148.3 255 42.0
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 7.5e-34 148.3 261 40.2
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 7.5e-34 148.3 252 42.5
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 2.9e-33 146.4 248 39.5
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 6.4e-33 145.2 253 41.9
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.4e-32 144.1 289 36.3
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 1.4e-32 144.1 236 39.8
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 2.4e-32 143.3 286 38.1
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 4.1e-32 142.5 209 43.5
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 7.0e-32 141.7 199 42.7
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 3.5e-31 139.4 289 36.7
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 4.6e-31 139.0 254 40.6
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 5.9e-31 138.7 254 39.0
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 1.0e-30 137.9 294 37.1
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 2.3e-30 136.7 254 37.8
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 3.0e-30 136.3 240 37.9
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 8.6e-30 134.8 256 37.9
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 1.1e-29 134.4 143 53.1
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 1.9e-29 133.7 139 51.8
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 3.3e-29 132.9 240 39.2
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 4.3e-29 132.5 203 39.4
Actinidia22456 Actinidia chinensis HOM05D004133 ORTHO05D004683 9.5e-29 131.3 110 60.9
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 9.5e-29 131.3 142 52.1
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 2.8e-28 129.8 289 34.3
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.8e-28 129.8 289 34.3
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 3.6e-28 129.4 243 39.9
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 1.4e-27 127.5 279 36.2
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 2.3e-27 126.7 234 38.5
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 2.3e-27 126.7 264 36.4
BcaC03g13852 Brassica carinata HOM05D004133 ORTHO05D004683 3.1e-27 126.3 182 43.4
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 5.2e-27 125.6 292 32.2
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 8.9e-27 124.8 236 36.0
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 4.4e-26 122.5 243 37.0
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 7.5e-26 121.7 247 37.7
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.7e-25 120.6 203 39.4
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.7e-25 120.6 248 38.7
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 2.9e-25 119.8 242 36.8
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 3.7e-25 119.4 247 37.2
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 8.3e-25 118.2 142 43.0
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 1.9e-24 117.1 129 48.8
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 5.4e-24 115.5 249 35.3
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 9.2e-24 114.8 249 34.1
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 1.2e-23 114.4 373 28.4
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 2.0e-23 113.6 207 38.6
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 7.8e-23 111.7 206 39.8
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 7.8e-23 111.7 132 45.5
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.3e-22 110.9 190 42.1
COL.COLO4_25369 Corchorus olitorius HOM05D004133 ORTHO05D004683 5.0e-22 109.0 97 53.6
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 8.6e-22 108.2 234 30.8
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 1.1e-21 107.8 241 36.1
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 3.3e-21 106.3 236 35.6
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 3.3e-21 106.3 189 38.1
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 4.3e-21 105.9 250 35.2
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 9.5e-21 104.8 241 35.7
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 4.7e-20 102.4 236 35.2
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 4.7e-20 102.4 236 35.2
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 4.7e-20 102.4 236 35.2
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 6.2e-20 102.1 247 35.6
Peaxi162Scf00259g00026 Petunia axillaris HOM05D004133 ORTHO05D004683 8.1e-20 101.7 183 38.8
BraA02t05633Z Brassica rapa HOM05D004133 ORTHO05D004683 3.1e-19 99.8 95 49.5
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 6.8e-19 98.6 247 33.2
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 3.4e-18 96.3 231 32.0
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 4.4e-18 95.9 187 32.6
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 7.5e-18 95.1 239 34.7
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 7.5e-18 95.1 192 33.3
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 1.4e-16 90.9 131 40.5
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 7.1e-16 88.6 136 43.4
Dinv18868 Davidia involucrata HOM05D004133 ORTHO05D004683 1.2e-15 87.8 76 55.3
Nitab4.5_0002426g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.1e-15 87.0 126 43.7
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 3.5e-15 86.3 151 36.4
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 7.8e-15 85.1 136 41.2
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 1.7e-14 84.0 135 41.5
C05p31580 Brassica napus HOM05D004133 ORTHO05D004683 1.9e-13 80.5 109 43.1
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 2.5e-13 80.1 234 32.5
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 3.3e-13 79.7 213 30.0
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 4.7e-12 75.9 154 40.3
Nitab4.5_0006895g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 8.1e-12 75.1 88 42.0
Nitab4.5_0006895g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.1e-11 74.7 141 39.7
Actinidia22457 Actinidia chinensis HOM05D004133 ORTHO05D004683 5.2e-11 72.4 87 52.9
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 9.9e-10 68.2 138 37.7
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 9.9e-10 68.2 160 31.9
Sed0022805 Sechium edule HOM05D004133 ORTHO05D004683 1.3e-09 67.8 81 43.2
Nitab4.5_0001357g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 3.7e-09 66.2 71 46.5
Nitab4.5_0011455g0030 Nicotiana tabacum HOM05D000770 ORTHO05D000586 1.4e-08 64.3 71 45.1
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 1.6e-07 60.8 158 29.7
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 2.1e-07 60.5 205 27.3
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 4.6e-07 59.3 189 32.8


User provided reference genes

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