Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.4e-95 350.1 171 100.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 2.1e-86 322.4 168 92.9
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.5e-81 304.7 168 88.1
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.7e-81 303.9 168 89.3
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.0e-77 291.6 161 86.3
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.3e-75 286.6 167 80.2
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 4.9e-75 284.6 167 82.6
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-74 283.1 168 76.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-74 283.1 168 76.2
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 2.4e-74 282.3 168 75.6
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 3.2e-74 282.0 167 76.6
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 5.4e-74 281.2 160 78.8
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 5.4e-74 281.2 189 72.0
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.4e-74 281.2 168 77.4
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 5.4e-74 281.2 167 79.0
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 7.0e-74 280.8 167 77.2
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.6e-73 279.6 160 78.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.7e-73 278.9 167 77.8
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 4.5e-73 278.1 170 75.9
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 5.9e-73 277.7 168 75.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.9e-73 277.7 168 75.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 5.9e-73 277.7 168 75.6
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 5.9e-73 277.7 167 79.0
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 7.8e-73 277.3 167 77.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.3e-72 276.6 160 78.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.3e-72 276.6 160 79.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.3e-72 275.8 167 76.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 8.6e-72 273.9 165 76.4
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.1e-71 273.5 167 73.1
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.1e-71 273.5 167 77.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.1e-71 273.5 167 77.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.9e-71 272.7 167 74.9
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 4.3e-71 271.6 161 75.8
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.6e-71 271.2 167 77.8
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.2e-70 270.0 169 74.6
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.6e-70 269.6 168 78.0
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 2.8e-70 268.9 167 73.7
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.7e-70 268.1 161 76.4
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.7e-70 268.1 168 73.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 6.1e-70 267.7 168 74.4
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 6.1e-70 267.7 167 72.5
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.1e-70 267.7 167 74.3
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.0e-69 266.9 168 71.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.4e-69 266.5 160 76.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.8e-69 266.2 168 71.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.3e-69 265.8 167 74.9
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 3.1e-69 265.4 167 73.1
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 4.0e-69 265.0 167 74.3
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 4.0e-69 265.0 167 74.3
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 5.2e-69 264.6 168 70.8
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 5.2e-69 264.6 167 74.9
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.2e-68 263.5 167 70.7
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 5.8e-68 261.2 163 73.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 5.8e-68 261.2 168 73.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 7.5e-68 260.8 174 71.8
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 7.5e-68 260.8 167 70.1
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 9.8e-68 260.4 167 71.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 9.8e-68 260.4 167 74.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.7e-67 259.6 167 72.5
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.2e-67 259.2 168 72.0
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.2e-67 259.2 167 73.1
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.7e-67 258.5 167 71.3
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 3.7e-67 258.5 167 72.5
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 4.9e-67 258.1 166 71.7
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.4e-67 257.7 170 70.6
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 8.3e-67 257.3 167 71.3
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 8.3e-67 257.3 169 72.2
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.1e-66 256.9 170 70.6
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.1e-66 256.9 167 70.1
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.4e-66 256.5 167 68.3
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 5.4e-66 254.6 167 73.1
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 7.0e-66 254.2 169 72.8
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 7.0e-66 254.2 167 68.3
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.0e-65 252.7 168 69.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.7e-65 252.3 167 71.9
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 6.0e-65 251.1 160 70.6
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.0e-64 250.4 168 70.8
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.0e-64 250.4 166 71.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 1.0e-64 250.4 167 67.1
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.9e-64 248.4 166 72.3
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.1e-63 246.9 196 61.2
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 4.3e-63 245.0 167 64.7
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 4.3e-63 245.0 168 68.5
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.2e-62 243.4 139 77.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 3.6e-62 241.9 167 68.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 6.2e-62 241.1 167 64.7
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.4e-60 235.0 160 69.4
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.2e-59 232.6 155 71.0
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.9e-59 232.3 221 52.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 3.7e-59 231.9 161 67.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.4e-58 229.9 162 67.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.1e-57 226.1 170 64.1
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.7e-56 223.0 167 61.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.3e-56 222.6 167 59.3
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 3.9e-56 221.9 167 59.3
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.1e-56 221.5 167 60.5
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.5e-55 219.2 167 58.1
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.3e-55 218.4 129 80.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.6e-54 216.5 126 80.2
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.8e-54 215.7 156 66.0
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 3.6e-54 215.3 167 57.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.4e-53 213.4 163 57.7
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.8e-53 213.0 125 76.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.8e-53 213.0 140 72.1
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 8.9e-53 210.7 161 59.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 8.9e-53 210.7 163 64.4
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-52 209.9 129 76.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.5e-49 198.7 115 85.2
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-48 196.8 167 52.1
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.3e-48 196.1 166 54.8
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.5e-47 192.6 126 69.8
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 6.2e-46 188.0 159 53.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 6.8e-45 184.5 159 52.2
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 6.8e-45 184.5 159 52.2
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 6.8e-45 184.5 159 52.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 6.8e-45 184.5 159 52.2
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 8.9e-45 184.1 159 52.2
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-44 183.7 167 49.7
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-44 183.7 167 49.7
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.7e-43 179.9 167 49.1
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.8e-43 178.7 129 68.2
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.4e-42 176.0 169 51.5
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.1e-41 172.9 168 52.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.4e-37 159.5 168 46.4
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-31 139.8 96 65.6
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 5.6e-31 138.3 153 44.4
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.3e-30 137.1 72 88.9
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 4.9e-27 125.2 102 59.8
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-25 119.8 80 70.0
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.6e-14 83.6 56 73.2
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.8e-14 82.0 55 60.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.8e-13 80.1 55 76.4
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 9.0e-13 77.8 48 70.8


User provided reference genes

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