Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 0.0e+00 1614.7 807 100.0
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 3.5e-240 835.5 804 60.1
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.2e-213 745.0 812 53.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.1e-212 744.2 812 54.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 6.2e-197 691.8 805 51.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.1e-188 664.5 807 50.2
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.8e-188 663.7 805 49.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 9.0e-188 661.4 807 50.1
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.5e-187 660.6 804 49.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.6e-187 659.8 806 48.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.9e-186 656.4 806 49.1
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.4e-185 654.1 809 48.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.4e-185 654.1 805 49.6
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.2e-185 652.9 809 48.8
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.0e-183 647.9 425 80.0
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.9e-183 646.0 363 88.2
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 8.7e-183 644.8 806 49.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.1e-182 644.4 805 47.3
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 9.7e-182 641.3 810 48.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.3e-181 641.0 805 48.1
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 4.8e-181 639.0 809 47.8
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.8e-181 639.0 805 47.7
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 8.2e-181 638.3 804 48.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 8.2e-181 638.3 706 52.5
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.1e-180 636.3 842 47.0
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.2e-179 634.4 804 48.0
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.2e-178 630.2 742 50.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.8e-178 629.4 806 47.4
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.8e-178 629.4 449 74.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.5e-177 626.7 806 48.9
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.5e-177 625.5 806 47.5
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.5e-177 625.5 806 47.5
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 5.5e-177 625.5 809 48.3
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 4.6e-176 622.5 806 48.8
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 6.1e-176 622.1 808 47.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.4e-175 620.9 807 47.7
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 3.9e-175 619.4 733 49.9
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 5.1e-175 619.0 808 47.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.9e-174 617.1 807 47.1
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 7.4e-174 615.1 809 47.7
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.7e-173 614.0 805 46.6
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.1e-172 611.3 706 50.7
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.8e-172 610.5 811 45.9
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 9.1e-172 608.2 805 47.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 9.1e-172 608.2 810 46.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 3.4e-171 606.3 805 45.5
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.4e-171 606.3 808 46.2
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-170 604.4 808 46.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.3e-170 604.4 819 45.1
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 2.2e-170 603.6 806 46.3
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.9e-170 603.2 442 70.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 2.9e-170 603.2 415 71.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.9e-170 603.2 806 45.9
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.8e-170 602.8 807 46.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 5.0e-170 602.4 739 47.6
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 5.0e-170 602.4 806 46.4
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.5e-169 600.1 438 71.0
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 5.5e-169 599.0 705 49.2
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 2.1e-168 597.0 810 45.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.6e-168 596.3 818 45.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.7e-167 592.0 727 47.2
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.3e-165 587.8 811 46.0
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 8.2e-165 585.1 747 46.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 3.1e-164 583.2 809 45.5
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 5.3e-164 582.4 808 45.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.5e-163 580.9 817 43.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.4e-163 579.7 725 46.5
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.7e-162 577.4 418 72.5
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 6.5e-162 575.5 805 45.6
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.3e-157 558.9 806 43.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 8.2e-157 558.5 834 43.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 9.1e-156 555.1 805 43.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 4.5e-155 552.7 811 44.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.0e-154 551.6 806 43.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.0e-154 551.6 446 65.9
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 3.8e-154 549.7 818 42.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.9e-153 547.4 806 42.7
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.9e-153 547.4 819 42.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.2e-153 546.6 810 43.1
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 5.2e-151 539.3 811 41.9
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.2e-150 538.1 811 42.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 2.8e-149 533.5 811 41.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 2.8e-149 533.5 811 41.8
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.7e-149 533.1 811 41.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.2e-149 531.9 807 42.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.2e-147 528.1 806 41.7
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.9e-147 525.8 806 41.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.9e-146 523.5 806 41.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.5e-145 521.2 807 41.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 9.4e-145 518.5 806 41.1
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.1e-144 517.3 684 44.9
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 2.1e-144 517.3 676 45.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 4.7e-144 516.2 808 40.8
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.0e-143 515.0 810 41.2
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.1e-140 501.9 831 40.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 2.9e-138 496.9 665 44.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 6.1e-136 489.2 808 39.6
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 2.0e-134 484.2 677 43.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.3e-133 481.5 877 38.7
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.6e-131 474.6 809 40.4
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.5e-129 467.2 415 60.7
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 3.6e-128 463.4 922 36.7
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 6.1e-128 462.6 808 39.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.0e-127 461.8 741 40.4
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.3e-127 460.7 727 40.0
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 2.0e-126 457.6 740 39.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 5.2e-119 433.0 814 37.7
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 6.8e-111 406.0 391 55.2
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.2e-110 405.2 382 57.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 7.8e-107 392.5 387 54.0
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.3e-106 391.7 330 63.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-99 367.9 461 48.4
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.0e-98 365.5 290 68.6
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 5.8e-94 349.7 383 49.6
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.9e-92 344.7 411 51.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 7.3e-89 332.8 380 49.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.3e-88 332.0 482 44.4
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 6.4e-77 293.1 241 68.0
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 7.1e-76 289.7 378 45.2
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.5e-73 281.2 369 44.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 2.7e-67 261.2 403 40.7
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 4.1e-63 247.3 544 33.1
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 3.7e-56 224.2 488 33.2
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.7e-51 208.0 158 64.6
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-46 191.0 275 42.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 6.7e-42 176.8 244 48.4
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-39 168.7 193 47.7
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 5.9e-38 163.7 178 56.2
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.9e-36 158.7 186 52.2
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.0e-35 153.3 178 53.4
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.0e-34 152.9 102 76.5
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 3.0e-34 151.4 114 71.9
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 2.6e-33 148.3 190 43.2
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.7e-33 146.4 190 43.2
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.1e-31 142.9 463 28.9
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 4.5e-30 137.5 145 60.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 4.5e-30 137.5 100 65.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.7e-29 135.6 152 50.7
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 6.5e-29 133.7 126 55.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 4.2e-28 131.0 178 43.3
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.2e-28 131.0 105 59.0
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.7e-27 128.3 177 42.9
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.1e-27 127.1 141 47.5
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.0e-26 126.3 168 43.5
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-24 119.4 82 73.2
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.8e-23 115.5 126 47.6
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.5e-22 110.9 126 47.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.6e-19 102.4 144 50.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.6e-19 102.4 63 82.5
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 5.2e-18 97.4 126 44.4
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.2e-16 92.0 195 32.8
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-15 89.7 113 46.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.4e-15 89.4 164 35.4
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.4e-15 89.4 164 35.4
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.8e-15 89.0 123 52.8
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.0e-13 83.2 153 30.7
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 1.0e-13 83.2 125 37.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.9e-13 81.3 92 51.1
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 5.0e-13 80.9 48 77.1
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.3e-12 78.2 48 75.0
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 6.4e-08 63.9 39 69.2
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 6.4e-08 63.9 39 69.2
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 6.4e-08 63.9 39 69.2
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 6.4e-08 63.9 39 69.2
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 4.1e-07 61.2 45 68.9
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 4.1e-07 61.2 45 68.9
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 4.1e-07 61.2 45 68.9
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 9.2e-07 60.1 43 74.4


User provided reference genes

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