Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 2.0e-214 748.8 378 100.0
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 3.3e-108 396.0 312 65.7
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 2.5e-95 353.2 315 58.1
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 5.1e-93 345.5 315 57.5
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.2e-86 324.3 315 54.0
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 4.8e-83 312.4 321 51.7
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 4.5e-73 279.3 362 43.9
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 2.9e-72 276.6 312 47.1
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 7.2e-71 271.9 313 47.3
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 9.4e-71 271.6 312 46.5
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 2.3e-69 266.9 364 42.0
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 5.2e-69 265.8 331 45.9
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.2e-68 264.6 317 44.8
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 5.7e-68 262.3 317 44.5
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.3e-67 261.2 317 44.2
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 2.8e-67 260.0 311 45.0
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 1.1e-66 258.1 320 45.6
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-66 257.7 319 43.9
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.4e-66 257.7 319 43.9
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.4e-66 257.7 316 44.6
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.4e-66 257.7 316 44.9
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.4e-66 256.9 319 44.8
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 3.1e-66 256.5 320 44.1
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 3.1e-66 256.5 320 45.3
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 2.7e-65 253.4 368 39.4
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 4.5e-65 252.7 318 43.4
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.2e-64 250.4 319 44.5
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 2.9e-64 250.0 316 43.4
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.8e-64 249.6 315 42.5
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.5e-63 247.7 309 42.7
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 2.5e-63 246.9 319 43.6
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 7.2e-63 245.4 315 42.2
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 1.2e-62 244.6 301 44.9
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.2e-62 244.6 316 42.4
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 1.6e-62 244.2 316 42.4
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 6.1e-62 242.3 318 44.0
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 6.1e-62 242.3 318 44.0
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.0e-61 241.5 313 43.1
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.4e-61 241.1 312 43.6
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.4e-61 241.1 311 43.4
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 4.0e-61 239.6 309 41.4
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 3.4e-60 236.5 268 47.4
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 4.4e-60 236.1 312 43.3
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 5.7e-60 235.7 314 41.1
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 7.5e-60 235.3 314 40.4
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 7.5e-60 235.3 316 41.5
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 1.7e-59 234.2 316 42.1
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.1e-58 231.5 320 40.3
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.8e-58 230.7 127 81.1
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 4.1e-58 229.6 312 40.7
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 7.0e-58 228.8 312 41.3
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-57 228.0 313 41.9
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 1.2e-57 228.0 321 41.4
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 4.5e-57 226.1 315 41.9
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 4.5e-57 226.1 316 42.1
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 1.0e-56 224.9 322 41.0
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.3e-56 224.6 323 40.6
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 2.9e-56 223.4 322 40.7
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 2.9e-56 223.4 322 40.7
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 2.5e-55 220.3 321 40.2
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 9.5e-55 218.4 317 41.3
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 2.1e-54 217.2 312 39.7
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 4.7e-54 216.1 127 74.0
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.0e-53 214.9 313 39.3
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 1.8e-53 214.2 321 38.9
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.8e-53 214.2 128 75.0
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 3.0e-53 213.4 320 39.1
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.0e-53 213.0 128 73.4
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 4.0e-53 213.0 135 70.4
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 4.0e-53 213.0 316 38.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 6.8e-53 212.2 322 38.8
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 6.8e-53 212.2 129 75.2
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.2e-52 211.5 319 38.2
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.0e-52 210.7 319 39.5
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 3.4e-52 209.9 314 37.3
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 5.7e-52 209.1 316 38.3
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 5.7e-52 209.1 316 38.6
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 7.5e-52 208.8 316 38.3
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 9.8e-52 208.4 314 37.3
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 1.3e-51 208.0 316 40.2
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 2.2e-51 207.2 314 37.6
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 2.8e-51 206.8 315 36.8
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 3.7e-51 206.5 315 36.8
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 4.9e-51 206.1 314 37.9
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.9e-51 206.1 282 41.5
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 2.4e-50 203.8 312 36.5
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 5.4e-50 202.6 314 38.2
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 9.2e-50 201.8 315 37.5
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.5e-49 199.9 128 72.7
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.3e-48 198.0 326 35.6
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.3e-48 198.0 326 35.6
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.7e-48 197.6 328 35.4
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.7e-48 197.6 306 38.6
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 5.0e-48 196.1 317 39.1
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.1e-47 194.9 324 35.2
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.1e-47 194.9 324 35.2
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 7.3e-47 192.2 122 69.7
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 7.3e-47 192.2 369 33.6
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 1.2e-46 191.4 163 57.1
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 4.7e-46 189.5 135 63.7
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 2.3e-45 187.2 133 59.4
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 7.5e-44 182.2 153 58.8
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 9.8e-44 181.8 126 65.9
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 2.2e-43 180.6 129 64.3
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 8.3e-43 178.7 129 63.6
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 3.2e-42 176.8 337 33.5
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.3e-40 171.4 258 38.8
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 2.3e-40 170.6 128 62.5
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 9.5e-39 165.2 129 61.2
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 6.2e-38 162.5 129 58.1
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.2e-36 158.3 269 34.6
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.7e-35 154.5 313 30.7
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 6.0e-33 146.0 315 31.4
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 1.7e-32 144.4 128 54.7
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 1.2e-30 138.3 307 30.9
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 4.7e-30 136.3 96 63.5
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.9e-26 124.4 272 30.5
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 7.8e-25 119.0 83 59.0
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 2.4e-21 107.5 143 42.7
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.3e-19 101.7 88 55.7
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 4.6e-17 93.2 104 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 9.6e-15 85.5 129 39.5
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 1.1e-13 82.0 103 38.8
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 7.6e-12 75.9 43 76.7
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 3.8e-11 73.6 67 56.7
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 5.1e-08 63.2 70 41.4
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 1.5e-07 61.6 50 54.0
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 2.5e-07 60.8 41 53.7
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.8e-06 56.6 41 48.8


User provided reference genes

Program Settings