Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.0e-233 813.1 443 100.0
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.7e-133 479.6 458 64.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.8e-121 440.3 505 55.2
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.5e-117 426.0 446 61.2
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.3e-116 424.1 490 57.3
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.5e-115 417.9 467 55.2
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-112 410.6 461 56.6
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 5.4e-110 402.1 382 59.7
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 9.6e-107 391.3 412 58.5
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.2e-106 391.0 480 52.1
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.1e-105 387.9 422 56.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.0e-104 383.6 499 50.3
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.1e-101 373.6 456 53.7
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.7e-100 370.5 375 58.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.1e-99 367.9 407 54.5
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.6e-98 362.8 335 60.3
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.1e-97 361.3 349 59.3
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.8e-97 360.5 382 55.5
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 5.3e-97 359.0 376 55.3
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 6.9e-97 358.6 426 50.9
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 2.6e-96 356.7 385 54.3
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.7e-95 354.0 314 61.5
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 1.4e-94 350.9 371 55.3
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 4.2e-94 349.4 394 53.3
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 4.2e-94 349.4 331 59.8
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.6e-93 347.4 316 62.0
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.6e-93 347.4 420 51.2
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.1e-93 347.1 314 61.8
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.1e-93 347.1 293 66.2
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 5.1e-92 342.4 380 56.1
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 6.6e-92 342.0 342 57.0
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 6.6e-92 342.0 341 57.8
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 6.6e-92 342.0 313 60.7
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 8.7e-92 341.7 492 45.9
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 1.1e-91 341.3 444 49.1
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.5e-91 340.9 313 60.4
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.9e-91 340.5 370 54.1
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 4.3e-91 339.3 390 51.3
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 5.6e-91 339.0 441 49.0
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 9.6e-91 338.2 441 48.5
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 3.6e-90 336.3 356 56.5
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 4.8e-90 335.9 339 56.9
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 8.1e-90 335.1 375 53.6
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 8.1e-90 335.1 375 53.6
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.4e-89 334.3 385 50.9
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 1.4e-89 334.3 392 51.5
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 1.8e-89 334.0 398 51.0
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 4.0e-89 332.8 289 63.7
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 9.0e-89 331.6 420 49.5
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.5e-88 330.9 424 47.4
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.0e-88 330.5 337 54.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.0e-88 330.5 434 51.2
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 3.4e-88 329.7 383 52.2
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 3.4e-88 329.7 432 50.2
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 4.5e-88 329.3 360 57.2
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.8e-88 328.9 361 54.6
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 7.6e-88 328.6 371 53.1
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.7e-87 327.4 334 58.4
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 2.9e-87 326.6 431 49.2
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 6.4e-87 325.5 378 52.4
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.4e-86 324.3 394 52.0
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 3.2e-86 323.2 404 51.2
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 5.4e-86 322.4 332 56.0
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 6.0e-85 318.9 366 53.6
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.0e-84 318.2 323 56.7
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 3.0e-84 316.6 319 57.1
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 5.1e-84 315.8 332 56.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 5.1e-84 315.8 372 54.3
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.5e-83 314.3 393 50.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 4.3e-83 312.8 341 55.4
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 4.3e-83 312.8 362 53.3
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 7.4e-83 312.0 361 51.0
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 9.6e-83 311.6 345 53.3
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.3e-82 311.2 379 51.2
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.3e-82 311.2 421 47.3
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.3e-82 311.2 379 51.2
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.3e-82 311.2 319 56.4
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.3e-82 311.2 308 55.8
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 1.3e-82 311.2 398 48.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.1e-82 310.5 379 50.9
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 6.2e-82 308.9 396 49.7
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.2e-82 308.9 380 50.5
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 8.1e-82 308.5 305 60.3
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 4.0e-81 306.2 349 52.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.0e-81 306.2 379 49.9
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 6.9e-81 305.4 379 49.9
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.5e-80 304.3 349 51.6
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.5e-80 304.3 416 46.9
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 2.0e-80 303.9 325 53.8
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 4.5e-80 302.8 325 53.5
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 4.5e-80 302.8 325 53.5
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 7.6e-80 302.0 326 53.7
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 7.6e-80 302.0 325 53.8
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.0e-79 301.6 310 56.1
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.9e-79 300.1 325 53.8
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 3.8e-79 299.7 359 52.1
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 6.5e-79 298.9 390 47.9
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.1e-78 298.1 332 53.6
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 1.1e-78 298.1 304 55.9
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.6e-77 294.3 395 49.6
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.0e-77 292.4 260 63.5
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 1.0e-76 291.6 308 53.9
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.0e-76 291.6 274 60.6
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.9e-75 287.3 240 65.4
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.6e-74 284.3 294 53.4
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 8.2e-74 282.0 230 66.1
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 8.2e-74 282.0 419 46.1
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 5.3e-73 279.3 354 48.9
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.2e-72 278.1 321 52.6
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.2e-72 278.1 352 49.4
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.2e-64 251.5 390 44.6
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.1e-52 209.5 146 76.0
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 9.1e-49 198.7 257 44.0
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.7e-47 194.5 137 75.9
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 3.3e-43 180.3 275 40.7
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.2e-39 167.5 276 40.9
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.2e-39 167.5 224 48.2
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 2.9e-39 167.2 255 41.2
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-37 161.8 196 48.0
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 1.4e-36 158.3 337 34.1
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.5e-35 152.5 113 75.2
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 8.8e-28 129.0 279 34.4
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.6e-27 127.5 210 40.5
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 9.8e-27 125.6 201 41.3
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.3e-26 125.2 103 59.2
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.3e-26 125.2 103 59.2
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.7e-26 124.8 197 40.1
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 4.9e-26 123.2 235 38.3
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 5.4e-25 119.8 210 39.5
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 2.8e-21 107.5 121 53.7
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 5.0e-15 86.7 94 50.0
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.1e-14 85.5 62 69.4
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 6.4e-10 69.7 118 46.6
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 2.4e-09 67.8 271 27.7
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 6.0e-08 63.2 123 42.3
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 5.6e-06 56.6 174 24.1


User provided reference genes

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