Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 1.8e-251 872.1 441 100.0
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 1.0e-201 706.8 419 87.1
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 7.9e-186 654.1 419 79.2
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 8.7e-185 650.6 419 79.5
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.6e-183 646.4 419 79.5
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 4.5e-181 638.3 419 78.8
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 4.5e-181 638.3 419 78.8
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 1.4e-179 633.3 419 77.1
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 1.1e-174 617.1 419 74.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 7.6e-173 610.9 408 77.5
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.0e-172 610.5 419 74.7
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.2e-172 609.4 419 74.9
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 8.4e-172 607.4 419 73.5
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.5e-171 605.9 419 75.2
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 7.1e-171 604.4 416 74.5
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.6e-170 603.2 418 74.2
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 4.6e-170 601.7 435 72.2
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.0e-169 600.5 419 73.3
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 2.3e-169 599.4 419 73.5
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 2.5e-168 595.9 417 73.4
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 5.7e-168 594.7 419 72.1
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.6e-167 593.2 419 72.6
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 6.9e-166 587.8 423 72.3
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.5e-165 586.6 419 72.8
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 2.0e-165 586.3 420 72.9
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.0e-165 586.3 421 73.2
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 4.5e-165 585.1 419 72.6
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 5.9e-165 584.7 420 71.2
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 3.8e-164 582.0 421 72.2
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 5.0e-164 581.6 424 71.5
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.4e-163 580.1 428 71.0
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.2e-163 578.6 416 71.9
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 7.2e-163 577.8 419 71.6
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 7.2e-163 577.8 419 72.3
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 1.6e-162 576.6 425 70.1
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.7e-162 575.9 421 72.0
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 6.1e-162 574.7 420 72.4
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.8e-161 573.2 419 71.4
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 3.0e-161 572.4 419 70.9
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.0e-161 572.4 422 71.6
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.8e-161 570.9 419 70.6
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 8.8e-161 570.9 422 71.1
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 2.0e-160 569.7 422 69.7
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 2.5e-160 569.3 425 68.9
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.5e-160 569.3 422 71.6
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.3e-160 568.9 419 70.6
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.3e-160 568.5 422 70.9
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 5.7e-160 568.2 422 70.9
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 7.4e-160 567.8 424 71.2
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-159 567.0 419 70.2
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 1.7e-159 566.6 424 70.5
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 3.7e-159 565.5 421 68.4
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.8e-159 565.1 424 70.0
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 6.3e-159 564.7 430 69.3
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 8.2e-159 564.3 420 71.2
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 4.1e-158 562.0 425 68.0
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 5.3e-158 561.6 431 68.9
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.0e-156 557.4 419 68.7
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 1.7e-156 556.6 424 68.9
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.7e-156 556.6 419 69.0
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 8.5e-156 554.3 419 68.0
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.4e-155 553.5 420 67.9
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 4.2e-155 552.0 411 69.3
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.6e-154 550.1 419 68.5
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.1e-154 549.7 444 66.7
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 4.7e-154 548.5 419 68.5
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 6.1e-154 548.1 419 68.5
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 1.0e-153 547.4 413 67.8
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 2.6e-152 542.7 391 71.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 4.4e-152 542.0 359 75.2
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.4e-150 537.0 427 64.9
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.4e-150 537.0 426 64.8
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 1.8e-150 536.6 425 64.9
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.8e-150 536.6 425 67.5
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 3.1e-150 535.8 421 66.5
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 4.1e-150 535.4 426 64.6
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 5.3e-150 535.0 424 65.6
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 9.1e-150 534.3 381 72.2
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 9.1e-150 534.3 420 66.9
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.2e-149 533.9 424 64.4
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 2.6e-149 532.7 425 64.0
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 2.6e-149 532.7 425 64.5
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.6e-149 532.7 421 66.5
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 5.9e-149 531.6 422 66.4
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 1.0e-148 530.8 425 64.5
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.7e-148 530.0 430 64.0
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 8.5e-148 527.7 378 69.8
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 1.4e-147 526.9 528 57.0
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 1.9e-147 526.6 426 63.6
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 1.6e-146 523.5 447 61.3
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 2.3e-145 519.6 413 66.8
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.1e-139 500.7 422 64.0
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.5e-139 499.6 388 67.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 6.1e-138 495.0 419 61.3
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 3.0e-137 492.7 420 59.8
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 1.5e-136 490.3 424 62.7
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.5e-136 490.3 423 61.9
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 3.8e-132 475.7 423 60.8
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.5e-131 473.8 394 60.7
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 3.1e-126 456.1 303 74.6
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 1.0e-124 451.1 364 61.3
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.2e-122 444.1 455 54.9
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 2.8e-122 443.0 392 59.4
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 9.8e-104 381.3 356 54.5
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 1.9e-75 287.3 334 51.8
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 2.6e-72 276.9 265 58.5
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 5.8e-72 275.8 284 55.3
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 7.9e-69 265.4 160 78.8
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.5e-67 261.2 218 59.6
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 9.0e-65 251.9 203 59.6
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.9e-63 246.9 236 58.5
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 2.5e-59 233.8 244 51.6
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 6.9e-57 225.7 256 50.4
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 4.6e-53 213.0 174 68.4
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.3e-52 211.5 279 46.6
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.3e-44 184.1 205 49.8
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 2.5e-43 180.6 110 77.3
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.8e-42 177.2 110 76.4
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.7e-39 167.9 349 32.1
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 5.0e-39 166.4 110 72.7
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 8.5e-39 165.6 131 63.4
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.1e-37 161.0 100 75.0
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.7e-34 151.4 150 61.3
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.1e-33 148.7 384 32.3
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 7.0e-33 146.0 308 32.5
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.0e-29 132.5 185 43.8
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.0e-28 132.1 185 43.8
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 2.0e-27 127.9 302 30.5
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 2.2e-23 114.4 209 33.0
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 8.0e-21 105.9 78 69.2
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.6e-19 100.9 278 27.0
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 3.4e-19 100.5 85 62.4
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.4e-17 95.1 60 76.7
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 5.4e-17 93.2 50 86.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 9.1e-17 92.4 51 82.4
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 1.2e-16 92.0 82 57.3
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.7e-16 89.4 49 81.6
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 6.5e-15 86.3 80 60.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 6.5e-15 86.3 80 60.0
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 6.5e-15 86.3 59 71.2
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.9e-14 84.7 51 80.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.5e-14 84.3 50 82.0
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.2e-14 83.6 53 75.5
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 5.5e-14 83.2 55 72.7
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 7.2e-14 82.8 51 70.6
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.2e-13 82.0 52 75.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.2e-13 82.0 76 56.6
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.7e-13 80.9 67 59.7
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.8e-12 78.2 52 73.1
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.5e-11 75.1 48 75.0
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.5e-11 75.1 48 75.0
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.2e-08 65.5 40 80.0
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 1.2e-08 65.5 49 65.3
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 2.7e-08 64.3 136 31.6
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 3.3e-06 57.4 75 46.7


User provided reference genes

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