Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.9e-31 137.5 69 100.0
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.2e-19 99.4 146 44.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 2.2e-10 68.6 60 63.3
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.8e-10 67.8 67 56.7
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 3.8e-10 67.8 48 68.8
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.8e-10 67.8 48 66.7
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.9e-10 67.4 48 68.8
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.9e-10 67.4 48 68.8
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 4.9e-10 67.4 48 70.8
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 4.9e-10 67.4 48 70.8
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 6.4e-10 67.0 48 68.8
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 6.4e-10 67.0 48 68.8
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 8.4e-10 66.6 48 68.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 8.4e-10 66.6 48 68.8
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 8.4e-10 66.6 48 64.6
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 8.4e-10 66.6 60 63.3
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.1e-09 66.2 48 68.8
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.1e-09 66.2 48 66.7
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.1e-09 66.2 48 66.7
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.1e-09 66.2 48 68.8
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.1e-09 66.2 48 68.8
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.4e-09 65.9 62 61.3
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.4e-09 65.9 62 61.3
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.4e-09 65.9 48 68.8
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.4e-09 65.9 48 68.8
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.9e-09 65.5 48 66.7
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.9e-09 65.5 60 60.0
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 1.9e-09 65.5 48 66.7
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 2.4e-09 65.1 48 66.7
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 2.4e-09 65.1 48 66.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 2.4e-09 65.1 48 66.7
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.4e-09 65.1 48 66.7
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.2e-09 64.7 48 66.7
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 3.2e-09 64.7 48 66.7
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 3.2e-09 64.7 48 66.7
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 3.2e-09 64.7 48 66.7
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 4.2e-09 64.3 62 59.7
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 4.2e-09 64.3 51 60.8
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 4.2e-09 64.3 48 64.6
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 4.2e-09 64.3 60 60.0
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 5.4e-09 63.9 48 64.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 5.4e-09 63.9 48 64.6
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 5.4e-09 63.9 48 64.6
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 64.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 66.7
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 62.5
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 62.5
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 64.6
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 64.6
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 7.1e-09 63.5 48 64.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 9.3e-09 63.2 48 66.7
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 9.3e-09 63.2 51 60.8
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 9.3e-09 63.2 51 60.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 9.3e-09 63.2 51 60.8
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 9.3e-09 63.2 51 60.8
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 9.3e-09 63.2 51 62.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 9.3e-09 63.2 48 64.6
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.2e-08 62.8 51 58.8
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.2e-08 62.8 51 58.8
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.2e-08 62.8 48 64.6
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.6e-08 62.4 48 64.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.6e-08 62.4 60 58.3
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.6e-08 62.4 48 64.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.1e-08 62.0 51 60.8
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.1e-08 62.0 48 64.6
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 2.1e-08 62.0 48 64.6
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 2.7e-08 61.6 62 56.5
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 2.7e-08 61.6 48 64.6
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.7e-08 61.6 66 50.0
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.5e-08 61.2 48 60.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 3.5e-08 61.2 48 62.5
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 3.5e-08 61.2 48 64.6
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 3.5e-08 61.2 48 60.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.6e-08 60.8 49 65.3
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 4.6e-08 60.8 48 60.4
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.6e-08 60.8 48 62.5
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.6e-08 60.8 48 62.5
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.6e-08 60.8 48 60.4
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 4.6e-08 60.8 48 60.4
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 6.0e-08 60.5 48 62.5
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 6.0e-08 60.5 49 63.3
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 7.9e-08 60.1 48 62.5
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 7.9e-08 60.1 48 62.5
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 7.9e-08 60.1 48 62.5
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 7.9e-08 60.1 63 60.3
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.0e-07 59.7 48 58.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.0e-07 59.7 48 60.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.0e-07 59.7 48 60.4
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.0e-07 59.7 48 62.5
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.3e-07 59.3 48 58.3
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.8e-07 58.9 48 58.3
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.8e-07 58.9 48 58.3
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.8e-07 58.9 60 51.7
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 2.3e-07 58.5 48 62.5
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 2.3e-07 58.5 48 60.4
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 2.3e-07 58.5 48 60.4
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 3.0e-07 58.2 48 56.2
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.0e-07 58.2 48 58.3
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.0e-07 58.2 48 58.3
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.0e-07 58.2 48 58.3
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.0e-07 58.2 48 58.3
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 3.0e-07 58.2 48 58.3
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 3.0e-07 58.2 35 77.1
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 3.9e-07 57.8 48 58.3
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 3.9e-07 57.8 48 58.3
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 3.9e-07 57.8 48 62.5
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 5.1e-07 57.4 48 58.3
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 6.7e-07 57.0 35 77.1
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 8.7e-07 56.6 48 58.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 8.7e-07 56.6 48 58.3
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.1e-06 56.2 48 56.2
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.1e-06 56.2 48 56.2
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.5e-06 55.8 60 53.3
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.5e-06 55.8 48 58.3
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.5e-06 55.8 48 54.2
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.5e-06 55.8 49 61.2
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 58.3
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 58.3
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 58.3
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 56.2
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 56.2
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 56.2
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 56.2
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 56.2
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 1.9e-06 55.5 48 56.2
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 2.5e-06 55.1 48 58.3
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.5e-06 55.1 48 56.2
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.3e-06 54.7 48 58.3
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 3.3e-06 54.7 48 60.4
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.6e-06 53.9 48 54.2
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 5.6e-06 53.9 35 71.4
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 5.6e-06 53.9 48 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 7.4e-06 53.5 35 71.4
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 7.4e-06 53.5 35 71.4
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 9.6e-06 53.1 48 52.1
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 9.6e-06 53.1 48 56.2


User provided reference genes

Program Settings