Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13895 Vaccinium macrocarpon HOM05D000749 ORTHO05D004893 2.5e-87 325.5 169 100.0
Rhsim07G0082100 Rhododendron simsii HOM05D000749 ORTHO05D004893 1.4e-34 150.2 155 58.1
CSS0037301 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D004893 1.3e-32 143.7 155 56.8
Actinidia22165 Actinidia chinensis HOM05D000749 ORTHO05D004893 3.3e-31 139.0 155 54.8
Rhsim02G0244400 Rhododendron simsii HOM05D000749 ORTHO05D004893 4.3e-31 138.7 155 56.1
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 7.3e-31 137.9 150 55.3
vmacro11351 Vaccinium macrocarpon HOM05D000749 ORTHO05D004893 1.4e-29 133.7 155 54.8
Actinidia22732 Actinidia chinensis HOM05D000749 ORTHO05D004893 6.8e-29 131.3 155 54.2
Hma1.2p1_0359F.1_g135190 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 6.8e-29 131.3 155 51.0
Dinv37527 Davidia involucrata HOM05D000749 ORTHO05D004893 1.5e-28 130.2 155 51.0
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.8e-28 128.3 151 54.3
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.8e-28 128.3 151 54.3
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 1.7e-27 126.7 155 49.7
Nitab4.5_0001210g0090 Nicotiana tabacum HOM05D000749 ORTHO05D004893 4.9e-27 125.2 161 47.8
Lj2A167T43 Lonicera japonica HOM05D000749 ORTHO05D004893 1.4e-26 123.6 155 49.7
Nitab4.5_0006775g0090 Nicotiana tabacum HOM05D000749 ORTHO05D004893 1.4e-26 123.6 82 75.6
PGSC0003DMG400012276 Solanum tuberosum HOM05D000749 ORTHO05D004893 2.4e-26 122.9 76 81.6
Nitab4.5_0012701g0010 Nicotiana tabacum HOM05D000749 ORTHO05D004893 3.2e-26 122.5 75 82.7
Solyc08g082430.4 Solanum lycopersicum HOM05D000749 ORTHO05D004893 3.2e-26 122.5 76 81.6
Dinv38827 Davidia involucrata HOM05D000749 ORTHO05D004893 4.1e-26 122.1 77 80.5
Manes.02G009500 Manihot esculenta HOM05D000749 ORTHO05D004893 4.1e-26 122.1 156 51.9
Sopen08g030680 Solanum pennellii HOM05D000749 ORTHO05D004893 1.6e-25 120.2 76 80.3
Solyc08g008340.4 Solanum lycopersicum HOM05D000749 ORTHO05D004893 2.0e-25 119.8 76 80.3
Sopen08g004220 Solanum pennellii HOM05D000749 ORTHO05D004893 2.0e-25 119.8 76 80.3
Thecc.03G298800 Theobroma cacao HOM05D000749 ORTHO05D004893 2.7e-25 119.4 156 51.3
Cpa.g.sc79.30 Carica papaya HOM05D000749 ORTHO05D004893 4.6e-25 118.6 156 49.4
PSO170G3723 Papaver somniferum HOM05D000749 ORTHO05D004893 6.0e-25 118.2 85 75.3
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 7.8e-25 117.9 162 45.7
TWI15G0737 Tripterygium wilfordii HOM05D000749 ORTHO05D004893 7.8e-25 117.9 77 77.9
ECA246G3365 Erigeron canadensis HOM05D000749 ORTHO05D004893 1.0e-24 117.5 85 68.2
TWI81G1040 Tripterygium wilfordii HOM05D000749 ORTHO05D004893 1.0e-24 117.5 78 76.9
Hund14217 Selenicereus undatus HOM05D000749 ORTHO05D004893 1.3e-24 117.1 161 44.1
Atru.chr9.1975 Acer truncatum HOM05D000749 ORTHO05D004893 1.7e-24 116.7 156 49.4
Atru.chr9.1990 Acer truncatum HOM05D000749 ORTHO05D004893 1.7e-24 116.7 156 49.4
HanXRQChr17g0534831 Helianthus annuus HOM05D000749 ORTHO05D004893 1.7e-24 116.7 83 68.7
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 5.0e-24 115.2 78 76.9
Haze_09070 Corylus avellana HOM05D000749 ORTHO05D004893 5.0e-24 115.2 78 76.9
CAN.G792.38 Capsicum annuum HOM05D000749 ORTHO05D004893 6.6e-24 114.8 76 77.6
Gohir.A12G236800 Gossypium hirsutum HOM05D000749 ORTHO05D004893 6.6e-24 114.8 156 50.0
Gohir.D12G238000 Gossypium hirsutum HOM05D000749 ORTHO05D004893 6.6e-24 114.8 156 50.0
Gorai.008G254800 Gossypium raimondii HOM05D000749 ORTHO05D004893 6.6e-24 114.8 156 50.0
Aqoxy5G04234 Aquilegia oxysepala HOM05D000749 ORTHO05D004893 8.6e-24 114.4 78 75.6
Ciclev10021969m.g Citrus clementina HOM05D000749 ORTHO05D004893 8.6e-24 114.4 78 73.1
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.1e-23 114.0 82 72.0
Duzib068G0699 Durio zibethinus HOM05D000749 ORTHO05D004893 1.5e-23 113.6 156 48.7
Nn1g00226 Nelumbo nucifera HOM05D000749 ORTHO05D004893 1.5e-23 113.6 95 68.4
Peaxi162Scf00074g00737 Petunia axillaris HOM05D000749 ORTHO05D004893 1.5e-23 113.6 76 75.0
CiPaw.12G082300 Carya illinoinensis HOM05D000749 ORTHO05D004893 1.9e-23 113.2 78 76.9
TAR629G0702 Trochodendron aralioides HOM05D000749 ORTHO05D004893 1.9e-23 113.2 156 48.7
Hma1.2p1_0440F.1_g153320 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 3.3e-23 112.5 155 47.7
Hma1.2p1_1461F.1_g285032 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 3.3e-23 112.5 155 47.7
MD06G1107800 Malus domestica HOM05D000749 ORTHO05D004893 4.3e-23 112.1 78 75.6
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 5.6e-23 111.7 83 68.7
Psat7g026120 Pisum sativum HOM05D000749 ORTHO05D004893 5.6e-23 111.7 85 71.8
Cc08_g16130 Coffea canephora HOM05D000749 ORTHO05D004893 7.3e-23 111.3 94 64.9
PGSC0003DMG400005792 Solanum tuberosum HOM05D000749 ORTHO05D004893 7.3e-23 111.3 76 77.6
arahy.Tifrunner.gnm1.ann1.VKZ8SJ Arachis hypogaea HOM05D000749 ORTHO05D004893 9.5e-23 110.9 80 75.0
arahy.Tifrunner.gnm1.ann1.WXZF1C Arachis hypogaea HOM05D000749 ORTHO05D004893 9.5e-23 110.9 80 75.0
Sc01g0010320 Simmondsia chinensis HOM05D000749 ORTHO05D004893 1.2e-22 110.5 77 70.1
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.6e-22 110.2 86 72.1
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.6e-22 110.2 86 72.1
Eucgr.E00871 Eucalyptus grandis HOM05D000749 ORTHO05D004893 1.6e-22 110.2 156 48.7
Lalb_Chr09g0332461 Lupinus albus HOM05D000749 ORTHO05D004893 1.6e-22 110.2 82 70.7
GSVIVG01019539001 Vitis vinifera HOM05D000749 ORTHO05D004893 1.6e-22 110.2 155 47.1
Lj8A207G53 Lonicera japonica HOM05D000749 ORTHO05D004893 2.1e-22 109.8 155 45.8
MBI07_g07103_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D004893 2.1e-22 109.8 78 74.4
Potri.003G140600 Populus trichocarpa HOM05D000749 ORTHO05D004893 2.1e-22 109.8 78 75.6
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 2.1e-22 109.8 77 76.6
SalBow1G2130 Salvia bowleyana HOM05D000749 ORTHO05D004893 2.1e-22 109.8 81 69.1
Hma1.2p1_0440F.1_g153330 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 3.6e-22 109.0 76 73.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 3.6e-22 109.0 78 73.1
SalBow1G3781 Salvia bowleyana HOM05D000749 ORTHO05D004893 3.6e-22 109.0 81 69.1
PGR042G0731 Punica granatum HOM05D000749 ORTHO05D004893 4.7e-22 108.6 78 74.4
CiPaw.11G120700 Carya illinoinensis HOM05D000749 ORTHO05D004893 6.2e-22 108.2 78 73.1
ClCG07G011590 Citrullus lanatus HOM05D000749 ORTHO05D004893 6.2e-22 108.2 77 76.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 8.0e-22 107.8 127 48.0
Gohir.D09G185100 Gossypium hirsutum HOM05D000749 ORTHO05D004893 8.0e-22 107.8 78 70.5
Gorai.006G207600 Gossypium raimondii HOM05D000749 ORTHO05D004893 8.0e-22 107.8 78 70.5
Potri.001G091001 Populus trichocarpa HOM05D000749 ORTHO05D004893 8.0e-22 107.8 78 70.5
MD14G1129200 Malus domestica HOM05D000749 ORTHO05D004893 1.1e-21 107.5 77 72.7
Oeu009964.1 Olea europaea HOM05D000749 ORTHO05D004893 1.1e-21 107.5 72 75.0
Oeu009965.1 Olea europaea HOM05D000749 ORTHO05D004893 1.1e-21 107.5 72 75.0
Gohir.A09G190400 Gossypium hirsutum HOM05D000749 ORTHO05D004893 1.4e-21 107.1 79 69.6
SalBow8G2356 Salvia bowleyana HOM05D000749 ORTHO05D004893 1.4e-21 107.1 76 72.4
THA.LOC104815110 Tarenaya hassleriana HOM05D000749 ORTHO05D004893 1.8e-21 106.7 77 70.1
Medtr8g099450 Medicago truncatula HOM05D000749 ORTHO05D004893 2.3e-21 106.3 86 69.8
PSO063G1647 Papaver somniferum HOM05D000749 ORTHO05D004893 2.3e-21 106.3 88 65.9
Peaxi162Scf00102g01843 Petunia axillaris HOM05D000749 ORTHO05D004893 2.3e-21 106.3 76 73.7
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.1e-21 105.9 96 62.5
Nitab4.5_0007367g0100 Nicotiana tabacum HOM05D000749 ORTHO05D004893 3.1e-21 105.9 59 88.1
SGA_v2.0_scaffold305G47986 Striga asiatica HOM05D000749 ORTHO05D004893 3.1e-21 105.9 82 67.1
Oeu054027.1 Olea europaea HOM05D000749 ORTHO05D004893 5.2e-21 105.1 72 73.6
RcHm_v2.0_Chr7g0194711 Rosa chinensis HOM05D000749 ORTHO05D004893 5.2e-21 105.1 96 60.4
TPR.G3411 Trifolium pratense HOM05D000749 ORTHO05D004893 5.2e-21 105.1 86 68.6
MSTRG.25680 Avicennia marina HOM05D000749 ORTHO05D004893 6.8e-21 104.8 76 68.4
Migut.A00637 Erythranthe guttata HOM05D000749 ORTHO05D004893 8.9e-21 104.4 82 64.6
LjContig00312_ERROPOS870357g0003779 Lotus japonicus HOM05D000749 ORTHO05D004893 8.9e-21 104.4 78 69.2
Sabra01G0067400 Salix brachista HOM05D000749 ORTHO05D004893 8.9e-21 104.4 89 65.2
THA.LOC104806438 Tarenaya hassleriana HOM05D000749 ORTHO05D004893 1.2e-20 104.0 78 67.9
AUR62010846 Chenopodium quinoa HOM05D000749 ORTHO05D004893 2.0e-20 103.2 83 65.1
AUR62019845 Chenopodium quinoa HOM05D000749 ORTHO05D004893 2.0e-20 103.2 83 65.1
FAN18G1347 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.0e-20 103.2 95 58.9
QL02p030265 Quercus lobata HOM05D000749 ORTHO05D004893 2.6e-20 102.8 79 70.9
HanXRQChr03g0083451 Helianthus annuus HOM05D000749 ORTHO05D004893 3.4e-20 102.4 155 43.9
Sed0014108 Sechium edule HOM05D000749 ORTHO05D004893 3.4e-20 102.4 77 71.4
ECA240G2456 Erigeron canadensis HOM05D000749 ORTHO05D004893 4.4e-20 102.1 80 63.8
VMungo0251G3129 Vigna mungo HOM05D000749 ORTHO05D004893 4.4e-20 102.1 79 68.4
FvH4_5g04670 Fragaria vesca HOM05D000749 ORTHO05D004893 5.8e-20 101.7 95 57.9
Lalb_Chr05g0211551 Lupinus albus HOM05D000749 ORTHO05D004893 5.8e-20 101.7 78 71.8
DCAR_029900 Daucus carota HOM05D000749 ORTHO05D004893 7.5e-20 101.3 61 80.3
MELO3C016297.2 Cucumis melo HOM05D000749 ORTHO05D004893 9.8e-20 100.9 77 71.4
CsaV3_4G006620 Cucumis sativus L. HOM05D000749 ORTHO05D004893 9.8e-20 100.9 77 71.4
Lalb_Chr05g0224151 Lupinus albus HOM05D000749 ORTHO05D004893 9.8e-20 100.9 80 66.2
Phvul.002G297900 Phaseolus vulgaris HOM05D000749 ORTHO05D004893 9.8e-20 100.9 79 68.4
Manes.01G048900 Manihot esculenta HOM05D000749 ORTHO05D004893 1.3e-19 100.5 156 46.2
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-19 100.1 80 62.5
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.2e-19 99.8 84 60.7
AT4G23900 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.2e-19 99.8 84 60.7
arahy.Tifrunner.gnm1.ann1.RP1N2X Arachis hypogaea HOM05D000749 ORTHO05D004893 2.2e-19 99.8 71 70.4
Carub.0007s1720 Capsella rubella HOM05D000749 ORTHO05D004893 2.9e-19 99.4 83 63.9
Sp6g06450 Schrenkiella parvula HOM05D000749 ORTHO05D004893 2.9e-19 99.4 79 68.4
Aa31LG9G11150 Aethionema arabicum HOM05D000749 ORTHO05D004893 3.7e-19 99.0 162 43.2
BcaB05g23872 Brassica carinata HOM05D000749 ORTHO05D004893 4.9e-19 98.6 79 68.4
AT4G11010 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 6.4e-19 98.2 79 68.4
BcaB01g01577 Brassica carinata HOM05D000749 ORTHO05D004893 6.4e-19 98.2 83 65.1
FAN08G0249 Fragaria x ananassa HOM05D000749 ORTHO05D004893 6.4e-19 98.2 102 58.8
CANSAT21G0815 Cannabis sativa HOM05D000749 ORTHO05D004893 1.1e-18 97.4 85 61.2
CARHR255610 Cardamine hirsuta HOM05D000749 ORTHO05D004893 1.9e-18 96.7 79 67.1
AL6G45080 Arabidopsis lyrata HOM05D000749 ORTHO05D004893 2.4e-18 96.3 79 65.8
BcaC09g50932 Brassica carinata HOM05D000749 ORTHO05D004893 3.2e-18 95.9 162 41.4
C01p19140 Brassica napus HOM05D000749 ORTHO05D004893 3.2e-18 95.9 162 41.4
BraA09t38387Z Brassica rapa HOM05D000749 ORTHO05D004893 3.2e-18 95.9 77 64.9
Carub.0006s2976 Capsella rubella HOM05D000749 ORTHO05D004893 3.2e-18 95.9 79 65.8
CARHR231310 Cardamine hirsuta HOM05D000749 ORTHO05D004893 3.2e-18 95.9 78 61.5
Oeu055036.1 Olea europaea HOM05D000749 ORTHO05D004893 3.2e-18 95.9 75 64.0
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.1e-18 95.5 112 53.6
A01p15210 Brassica napus HOM05D000749 ORTHO05D004893 5.4e-18 95.1 162 42.6
A09p28210 Brassica napus HOM05D000749 ORTHO05D004893 7.0e-18 94.7 161 41.0
A02p26430 Brassica napus HOM05D000749 ORTHO05D004893 9.2e-18 94.4 77 66.2
BolC1t01840H Brassica oleracea HOM05D000749 ORTHO05D004893 9.2e-18 94.4 84 58.3
BraA02t07646Z Brassica rapa HOM05D000749 ORTHO05D004893 9.2e-18 94.4 77 66.2
Thhalv10028863m.g Eutrema salsugineum HOM05D000749 ORTHO05D004893 9.2e-18 94.4 79 67.1
Sp7g21870 Schrenkiella parvula HOM05D000749 ORTHO05D004893 9.2e-18 94.4 78 64.1
BraA01t01459Z Brassica rapa HOM05D000749 ORTHO05D004893 1.6e-17 93.6 162 41.4
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-17 93.6 111 50.5
BcaC03g16379 Brassica carinata HOM05D000749 ORTHO05D004893 2.7e-17 92.8 77 64.9
C02p42010 Brassica napus HOM05D000749 ORTHO05D004893 2.7e-17 92.8 77 64.9
BolC2t10234H Brassica oleracea HOM05D000749 ORTHO05D004893 2.7e-17 92.8 77 64.9
Glyma.08G022500 Glycine max HOM05D000749 ORTHO05D004893 3.5e-17 92.4 83 61.4
CDE02G2766 Ceratophyllum demersum HOM05D000749 ORTHO05D004893 1.0e-16 90.9 81 63.0
Glyma.05G216700 Glycine max HOM05D000749 ORTHO05D004893 3.0e-16 89.4 89 59.6
BcaNung01097 Brassica carinata HOM05D000749 ORTHO05D004893 5.1e-16 88.6 162 39.5
HPP92_020195 Vanilla planifolia HOM05D000749 ORTHO05D004893 6.6e-16 88.2 156 39.7
Sed0008210 Sechium edule HOM05D000749 ORTHO05D004893 8.6e-16 87.8 79 67.1
CAN.G1804.11 Capsicum annuum HOM05D000749 ORTHO05D004893 2.5e-15 86.3 47 91.5
SEGI_10731 Sequoiadendron giganteum HOM05D000749 ORTHO05D004893 3.3e-15 85.9 78 60.3
SEGI_23492 Sequoiadendron giganteum HOM05D000749 ORTHO05D004893 3.3e-15 85.9 78 60.3
unitig_0.g2840 Utricularia gibba HOM05D000749 ORTHO05D004893 5.6e-15 85.1 77 62.3
Zm00001eb345550 Zea mays HOM05D000749 ORTHO05D004893 7.3e-15 84.7 82 59.8
Zm00001eb297860 Zea mays HOM05D000749 ORTHO05D004893 1.6e-14 83.6 81 61.7
Os05g0595400 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D004893 4.4e-12 75.5 79 57.0
Pp3c16_14020 Physcomitrium patens HOM05D000749 ORTHO05D004893 1.1e-10 70.9 80 48.8
Pp3c27_5820 Physcomitrium patens HOM05D000749 ORTHO05D004893 4.1e-10 68.9 82 47.6
Mapoly0014s0104 Marchantia polymorpha HOM05D000749 ORTHO05D004893 2.7e-09 66.2 80 48.8
ATR0602G085 Amborella trichopoda HOM05D000749 ORTHO05D004893 6.0e-09 65.1 50 70.0
SMO358G0639 Selaginella moellendorffii HOM05D000749 ORTHO05D004893 6.0e-09 65.1 80 51.2
BcaC04g21094 Brassica carinata HOM05D000749 ORTHO05D032201 1.0e-08 64.3 43 76.7
BolC9t56409H Brassica oleracea HOM05D000749 ORTHO05D032201 1.0e-08 64.3 43 76.7
Duzib084G0871 Durio zibethinus HOM05D000749 ORTHO05D004893 1.0e-08 64.3 58 58.6
AagrBONN_evm.TU.Sc2ySwM_228.341 Anthoceros agrestis HOM05D000749 ORTHO05D004893 2.5e-07 59.7 48 60.4
MELO3C030757.2 Cucumis melo HOM05D019527 ORTHO05D006049 3.3e-07 59.3 29 96.6
COL.COLO4_10709 Corchorus olitorius HOM05D000749 ORTHO05D004893 7.3e-07 58.2 46 67.4


User provided reference genes

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