Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.5e-175 619.4 307 100.0
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 7.1e-117 424.5 274 83.9
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.4e-109 398.3 243 84.4
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.8e-108 394.4 243 82.7
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.0e-107 394.0 243 83.1
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 1.9e-106 389.8 243 83.1
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.6e-106 388.3 243 81.5
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 8.1e-105 384.4 243 80.2
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 1.8e-104 383.3 243 80.2
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 1.8e-104 383.3 243 81.9
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 4.0e-104 382.1 243 80.2
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 4.0e-104 382.1 243 81.1
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 5.2e-104 381.7 243 81.5
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 8.9e-104 380.9 249 81.5
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 1.5e-103 380.2 243 80.2
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 1.5e-103 380.2 243 79.4
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 2.0e-103 379.8 243 79.4
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 2.6e-103 379.4 243 79.8
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 4.4e-103 378.6 269 75.1
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 4.4e-103 378.6 253 76.7
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 4.4e-103 378.6 253 76.7
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 4.4e-103 378.6 242 79.8
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 4.4e-103 378.6 243 79.8
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 5.8e-103 378.3 243 79.8
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 5.8e-103 378.3 243 79.8
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 7.6e-103 377.9 243 80.7
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 9.9e-103 377.5 251 77.3
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 1.7e-102 376.7 262 74.4
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 3.8e-102 375.6 243 80.7
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 3.8e-102 375.6 243 79.4
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 4.9e-102 375.2 243 79.8
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.4e-102 374.8 243 79.4
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 6.4e-102 374.8 243 81.1
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 6.4e-102 374.8 243 77.8
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 6.4e-102 374.8 243 80.7
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 8.4e-102 374.4 243 79.4
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-101 374.0 243 79.4
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 1.1e-101 374.0 243 80.2
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 1.4e-101 373.6 245 80.0
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 1.4e-101 373.6 243 79.0
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 1.4e-101 373.6 243 77.8
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 1.4e-101 373.6 243 79.4
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 4.2e-101 372.1 243 79.0
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 7.1e-101 371.3 245 79.2
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 7.1e-101 371.3 245 79.2
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 4.6e-100 368.6 243 77.4
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 6.0e-100 368.2 245 77.1
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 1.0e-99 367.5 243 78.6
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 1.0e-99 367.5 243 78.6
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 1.7e-99 366.7 245 77.1
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 1.7e-99 366.7 243 77.4
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 2.3e-99 366.3 252 75.8
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 2.3e-99 366.3 243 77.0
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 3.0e-99 365.9 243 78.2
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 3.0e-99 365.9 243 77.8
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 3.9e-99 365.5 245 77.1
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 3.9e-99 365.5 243 78.2
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 5.1e-99 365.2 243 77.8
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 5.1e-99 365.2 243 77.4
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 6.6e-99 364.8 245 77.1
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 6.6e-99 364.8 285 69.8
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 1.1e-98 364.0 243 77.8
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.5e-98 363.6 245 77.1
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 1.5e-98 363.6 243 76.5
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 1.5e-98 363.6 245 75.5
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 1.9e-98 363.2 243 78.6
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 3.3e-98 362.5 243 77.0
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 4.3e-98 362.1 243 77.0
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 4.3e-98 362.1 244 78.3
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 4.3e-98 362.1 243 77.0
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 5.6e-98 361.7 240 77.9
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 5.6e-98 361.7 243 77.4
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 7.3e-98 361.3 243 77.0
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 7.3e-98 361.3 243 77.0
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.3e-97 360.5 243 77.0
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.6e-97 360.1 243 75.7
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 3.6e-97 359.0 243 76.1
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 4.8e-97 358.6 249 76.7
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 4.8e-97 358.6 243 77.0
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 6.2e-97 358.2 239 77.0
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 8.1e-97 357.8 243 76.5
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 1.1e-96 357.5 243 76.1
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 1.4e-96 357.1 245 74.7
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 1.4e-96 357.1 243 77.8
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 3.1e-96 355.9 243 77.8
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 3.1e-96 355.9 243 76.5
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 6.9e-96 354.8 243 75.3
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 6.9e-96 354.8 243 74.5
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.5e-95 353.6 265 72.1
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 2.0e-95 353.2 245 73.9
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.7e-94 350.1 243 74.5
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 2.9e-94 349.4 243 75.7
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 4.9e-94 348.6 245 74.7
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 6.4e-94 348.2 243 74.5
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 8.4e-94 347.8 243 75.3
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 8.4e-94 347.8 243 73.3
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 4.2e-93 345.5 243 74.5
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 5.4e-93 345.1 243 74.1
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 5.4e-93 345.1 252 72.2
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 1.6e-92 343.6 243 73.7
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 1.6e-92 343.6 243 73.7
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 1.6e-92 343.6 243 72.4
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 2.1e-92 343.2 245 72.7
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 2.7e-92 342.8 243 72.0
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 2.7e-92 342.8 243 73.7
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 4.6e-92 342.0 243 72.0
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 7.9e-92 341.3 243 73.7
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 1.7e-91 340.1 251 72.1
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 1.7e-91 340.1 243 73.7
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.3e-91 339.7 252 71.0
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 3.0e-91 339.3 243 73.3
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 3.0e-91 339.3 243 73.3
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 1.1e-90 337.4 243 72.8
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 1.1e-90 337.4 243 72.8
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 1.5e-90 337.0 243 72.8
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 1.5e-90 337.0 243 72.8
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 1.5e-90 337.0 243 72.8
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 2.5e-90 336.3 243 72.4
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 2.5e-90 336.3 243 72.4
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 2.5e-90 336.3 243 72.8
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 3.3e-90 335.9 243 72.4
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 5.6e-90 335.1 251 70.9
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 7.4e-90 334.7 243 72.4
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 1.6e-89 333.6 243 71.6
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.6e-89 333.6 243 71.6
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.6e-89 333.6 243 71.6
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.1e-89 333.2 243 71.6
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 3.6e-89 332.4 243 71.2
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 8.1e-89 331.3 243 71.2
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 8.1e-89 331.3 243 72.8
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.8e-88 330.1 284 65.5
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 4.0e-88 328.9 186 88.7
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 2.0e-87 326.6 256 69.5
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.8e-87 325.1 281 64.8
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 1.3e-86 323.9 243 68.7
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 9.3e-85 317.8 204 81.9
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 6.0e-84 315.1 204 79.4
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.8e-83 313.5 243 70.4
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 2.3e-83 313.2 209 77.5
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 1.5e-82 310.5 206 77.7
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 2.5e-82 309.7 245 64.9
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 5.6e-82 308.5 245 64.9
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 7.4e-82 308.1 245 64.5
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 3.7e-81 305.8 203 76.8
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 3.4e-79 299.3 206 74.8
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 1.1e-72 277.7 245 58.4
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 2.9e-70 269.6 249 56.6
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.7e-65 252.7 243 59.3
Peaxi162Scf00117g00921 Petunia axillaris HOM05D003558 ORTHO05D004392 4.8e-65 252.3 153 83.0
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 6.5e-62 241.9 247 54.3
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 3.7e-57 226.1 252 54.4
Haze_09103 Corylus avellana HOM05D003558 ORTHO05D004392 6.3e-57 225.3 128 89.1
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 6.9e-56 221.9 150 76.7
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 5.5e-53 212.2 143 76.2
RcHm_v2.0_Chr2g0138681 Rosa chinensis HOM05D003558 ORTHO05D004392 6.7e-51 205.3 218 56.4
PRCOL_00000075 Prasinoderma coloniale HOM05D003558 ORTHO05D004392 1.3e-49 201.1 236 45.8
Eucgr.E00961 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.8e-49 199.9 125 83.2
Nitab4.5_0007285g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 7.0e-48 195.3 152 70.4
FvH4_6g31620 Fragaria vesca HOM05D003558 ORTHO05D004392 2.0e-47 193.7 217 53.9
Cre17.g708300 Chlamydomonas reinhardtii HOM05D003558 ORTHO05D004392 4.2e-45 186.0 239 45.2
FAN09G0436 Fragaria x ananassa HOM05D003558 ORTHO05D004392 4.2e-45 186.0 265 47.2
MCO10G293 Micromonas commoda HOM05D003558 ORTHO05D004392 9.4e-45 184.9 173 51.4
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 9.7e-42 174.9 108 80.6
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.7e-41 174.1 139 67.6
Actinidia22185 Actinidia chinensis HOM05D003558 ORTHO05D005715 2.4e-40 170.2 129 69.0
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 4.1e-40 169.5 147 66.0
CSS0010814 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.7e-38 164.1 133 69.2
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 2.2e-25 120.6 71 81.7
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 2.9e-22 110.2 73 74.0
CSS0047737 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 5.0e-22 109.4 61 85.2
CSS0029558 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 8.6e-22 108.6 59 86.4
Sc07g0010140 Simmondsia chinensis HOM05D003558 ORTHO05D004392 5.2e-19 99.4 191 37.2
Psat6g100040 Pisum sativum HOM05D003558 ORTHO05D004392 6.8e-19 99.0 91 57.1
CSS0046828 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.4e-16 91.3 54 81.5
Aqoxy2G02712 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 3.2e-16 90.1 81 58.0
CSS0000450 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 4.1e-16 89.7 49 87.8
Aa31LG9G160 Aethionema arabicum HOM05D003558 ORTHO05D004392 3.5e-15 86.7 80 61.2
CSS0004905 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-13 81.3 44 86.4
Actinidia03832 Actinidia chinensis HOM05D005426 ORTHO05D006996 3.4e-10 70.1 49 67.3
Lsat_1_v5_gn_1_89161 Lactuca sativa HOM05D003558 ORTHO05D230340 3.2e-08 63.5 46 65.2
CSS0047180 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D110027 5.4e-08 62.8 35 82.9
AUR62042885 Chenopodium quinoa HOM05D003558 ORTHO05D138145 1.0e-06 58.5 45 64.4
Eucgr.E00694 Eucalyptus grandis HOM05D003558 ORTHO05D193878 1.0e-06 58.5 40 72.5
AUR62036024 Chenopodium quinoa HOM05D000031 ORTHO05D010178 1.3e-06 58.2 42 69.0
Eucgr.E00909 Eucalyptus grandis HOM05D003558 ORTHO05D191499 1.3e-06 58.2 56 57.1


User provided reference genes

Program Settings