Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.2e-99 365.2 191 100.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 5.8e-69 264.6 195 76.4
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.6e-64 248.1 158 81.6
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.4e-64 247.7 194 70.6
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.6e-63 246.5 199 68.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.6e-63 246.5 195 70.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.8e-63 245.7 193 69.4
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.4e-62 243.4 194 69.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.4e-62 243.4 194 70.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.4e-62 243.4 193 68.4
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 4.0e-62 241.9 194 69.1
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.3e-62 241.5 194 69.1
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 9.0e-62 240.7 192 69.8
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.2e-61 240.4 195 69.2
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.5e-61 240.0 194 69.6
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.5e-61 240.0 194 69.1
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.6e-61 239.2 194 69.1
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.6e-61 239.2 194 69.1
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.6e-61 239.2 194 68.0
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.8e-61 238.0 194 68.0
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 5.8e-61 238.0 187 69.5
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 5.8e-61 238.0 187 69.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.6e-61 237.7 189 68.8
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 9.9e-61 237.3 182 71.4
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 9.9e-61 237.3 196 67.9
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.3e-60 236.9 158 77.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.3e-60 236.9 194 66.5
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.3e-60 236.9 155 79.4
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.3e-60 236.9 195 68.2
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.2e-60 236.1 194 67.0
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.2e-60 236.1 194 68.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 2.2e-60 236.1 194 68.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.9e-60 235.7 194 66.0
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.9e-60 235.7 192 69.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.9e-60 235.7 200 66.0
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 6.4e-60 234.6 194 68.0
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 8.4e-60 234.2 194 69.1
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.1e-59 233.8 182 68.7
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.4e-59 233.4 188 68.1
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.9e-59 233.0 194 66.0
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.9e-59 233.0 195 67.2
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 2.4e-59 232.6 158 74.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.4e-59 232.6 167 72.5
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 2.4e-59 232.6 203 66.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 2.4e-59 232.6 203 66.0
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 3.2e-59 232.3 195 65.1
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 4.2e-59 231.9 188 67.6
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.2e-59 231.9 199 65.3
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 5.5e-59 231.5 192 67.7
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 7.1e-59 231.1 192 67.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 7.1e-59 231.1 179 70.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-58 230.3 200 65.0
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.6e-58 229.9 186 67.7
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 2.7e-58 229.2 170 70.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 2.7e-58 229.2 190 63.7
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 4.6e-58 228.4 186 65.6
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 6.0e-58 228.0 169 70.4
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 6.0e-58 228.0 193 66.3
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.0e-58 228.0 192 66.1
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 7.9e-58 227.6 194 63.9
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 7.9e-58 227.6 194 66.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 1.0e-57 227.3 163 73.6
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.3e-57 226.9 192 65.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.8e-57 226.5 165 73.3
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.8e-57 226.5 171 71.9
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.3e-57 226.1 192 64.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 3.0e-57 225.7 193 65.3
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.9e-57 225.3 192 65.6
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.9e-57 225.3 192 66.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.7e-57 224.6 194 62.9
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.5e-56 223.4 165 68.5
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.9e-56 223.0 194 62.9
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.9e-56 223.0 192 66.7
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.5e-56 222.6 182 67.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.5e-56 222.6 190 64.7
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 7.4e-56 221.1 176 65.9
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 7.4e-56 221.1 192 65.1
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 9.6e-56 220.7 182 67.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.6e-55 219.9 187 66.8
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.1e-55 219.5 158 70.9
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.8e-55 219.2 194 58.8
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 3.7e-55 218.8 196 61.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 4.8e-55 218.4 196 59.2
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.8e-55 218.4 192 64.6
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-54 216.9 197 60.4
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-54 216.9 196 61.2
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.8e-54 216.5 192 63.0
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.8e-54 216.5 153 75.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 3.1e-54 215.7 162 71.6
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.0e-54 215.3 196 60.7
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.0e-54 214.2 192 62.5
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 2.0e-53 213.0 186 65.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.6e-53 212.6 197 61.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 5.8e-53 211.5 192 63.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 7.6e-53 211.1 192 64.1
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.0e-52 210.7 176 64.8
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.7e-52 209.9 194 62.4
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.2e-52 209.5 187 61.5
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 2.2e-52 209.5 194 62.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 3.8e-52 208.8 194 58.2
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 4.9e-52 208.4 172 65.7
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.1e-51 207.2 195 60.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-51 207.2 192 62.0
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.4e-51 206.8 160 66.2
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 1.4e-51 206.8 193 61.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.4e-51 206.8 196 60.7
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.9e-51 206.5 185 61.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.5e-51 206.1 156 69.2
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 2.5e-51 206.1 192 62.5
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.2e-51 205.7 201 57.2
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 5.5e-51 204.9 190 62.1
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 3.5e-50 202.2 197 59.9
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 6.0e-50 201.4 195 60.0
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 6.0e-50 201.4 208 57.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.0e-49 199.1 197 59.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 6.7e-49 198.0 190 61.6
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 8.7e-49 197.6 168 61.9
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.5e-48 196.8 191 58.1
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 4.3e-48 195.3 156 66.0
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 5.7e-48 194.9 258 50.4
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 9.6e-48 194.1 198 56.6
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.5e-45 186.8 174 59.8
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.5e-45 186.8 181 60.8
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.6e-45 186.0 170 62.4
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.2e-43 178.7 128 68.0
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.6e-42 176.8 148 63.5
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.0e-41 174.1 111 73.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.1e-41 171.8 104 79.8
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 6.7e-41 171.4 147 61.2
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 4.3e-40 168.7 205 52.2
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 4.3e-40 168.7 170 57.6
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 9.1e-38 161.0 175 53.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 6.5e-36 154.8 193 52.8
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 8.5e-36 154.5 131 65.6
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.9e-35 153.3 193 52.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.2e-35 152.1 129 62.8
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.5e-35 151.8 189 51.9
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.5e-35 151.8 126 61.1
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.7e-34 149.4 127 62.2
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.6e-34 149.1 127 62.2
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.7e-33 144.8 127 62.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.6e-32 142.9 189 51.3
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.3e-32 142.5 82 79.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 4.4e-32 142.1 156 48.1
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-31 140.6 138 58.7
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.2e-31 139.8 115 64.3
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 8.2e-31 137.9 166 48.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.8e-30 136.7 138 50.0
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.0e-29 133.3 144 45.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.2e-27 125.9 154 44.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.1e-26 121.7 163 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.0e-25 119.4 160 40.0
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.2e-23 113.2 122 50.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.2e-21 107.5 115 53.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.0e-17 92.8 83 59.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 5.3e-14 82.0 197 40.1
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.7e-13 79.7 58 58.6
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.7e-10 69.7 104 47.1
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 3.0e-09 66.2 180 35.0


User provided reference genes

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