Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 3.2e-295 1017.7 514 100.0
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 4.8e-227 791.2 433 92.8
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 6.7e-213 744.2 445 83.6
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.4e-212 740.7 420 88.6
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.3e-211 740.0 424 87.3
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 5.3e-210 734.6 464 81.7
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 7.7e-209 730.7 426 85.7
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 7.7e-209 730.7 428 86.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-208 730.3 434 84.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.0e-208 730.3 434 85.5
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.2e-208 729.2 447 83.7
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.9e-208 728.8 445 82.7
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 3.8e-208 728.4 429 84.8
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.0e-208 728.0 465 80.4
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 5.0e-208 728.0 438 83.8
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 8.5e-208 727.2 465 79.4
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.1e-207 726.9 428 85.7
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.5e-207 725.7 428 84.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.5e-207 725.7 438 83.6
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 2.5e-207 725.7 424 86.6
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 2.5e-207 725.7 437 83.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.5e-207 725.7 426 86.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 3.2e-207 725.3 438 83.6
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 9.4e-207 723.8 426 85.2
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.0e-205 720.3 426 84.0
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 6.8e-205 717.6 434 82.3
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 6.8e-205 717.6 435 83.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.2e-204 716.8 428 84.3
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.2e-204 716.8 481 76.7
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.7e-204 713.8 435 81.6
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.3e-203 713.4 414 85.7
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.3e-203 713.4 436 81.0
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.3e-203 713.4 428 84.3
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.3e-203 713.4 428 81.8
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.7e-203 713.0 433 82.0
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.7e-203 713.0 434 83.2
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.7e-203 713.0 438 81.5
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.7e-203 713.0 451 79.6
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 2.8e-203 712.2 435 82.8
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 3.7e-203 711.8 436 82.3
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 3.7e-203 711.8 435 82.5
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 6.3e-203 711.1 424 83.7
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 8.3e-203 710.7 447 81.0
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 8.3e-203 710.7 440 80.9
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.4e-202 709.9 434 82.5
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.8e-202 709.5 440 80.7
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 1.8e-202 709.5 428 83.4
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.4e-202 709.1 440 80.5
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.1e-202 708.4 435 81.6
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.3e-202 708.0 459 79.5
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 7.0e-202 707.6 434 81.1
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 7.0e-202 707.6 435 81.1
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 9.1e-202 707.2 455 78.7
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.2e-201 706.8 434 80.0
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.6e-201 706.4 444 80.0
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.6e-201 706.4 428 82.9
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 2.0e-201 706.1 428 82.9
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.0e-201 706.1 436 79.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.7e-201 705.7 436 81.0
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.7e-201 705.7 435 81.4
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 3.5e-201 705.3 436 81.0
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 5.9e-201 704.5 440 80.0
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 5.9e-201 704.5 440 80.0
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 7.7e-201 704.1 453 79.0
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 7.7e-201 704.1 428 83.2
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.0e-200 703.7 438 81.1
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.3e-200 703.4 436 81.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.3e-200 703.4 430 81.9
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.3e-200 703.4 430 81.6
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-200 703.0 440 80.0
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-200 703.0 440 80.2
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.9e-200 702.2 451 78.7
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 3.8e-200 701.8 440 79.8
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 5.0e-200 701.4 445 78.9
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 6.5e-200 701.0 455 78.7
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 6.5e-200 701.0 444 78.8
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.5e-199 699.9 430 81.2
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.5e-199 699.9 438 80.6
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.5e-199 699.9 438 80.6
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.5e-199 699.9 440 80.2
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.9e-199 699.5 444 81.1
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 5.5e-199 698.0 430 80.9
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 7.2e-199 697.6 504 75.2
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 9.4e-199 697.2 426 82.2
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 9.4e-199 697.2 424 82.3
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.2e-198 696.8 430 80.7
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 4.7e-198 694.9 427 81.7
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.3e-197 692.6 425 82.1
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.0e-197 691.8 431 80.3
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 5.2e-197 691.4 439 80.0
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.0e-196 689.5 421 81.9
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 2.0e-196 689.5 436 79.4
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 7.5e-196 687.6 424 80.0
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.3e-195 686.8 425 81.4
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.3e-195 686.8 438 80.1
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.7e-195 686.4 440 78.6
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.7e-195 685.3 424 79.7
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.3e-195 684.1 435 80.2
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.8e-194 682.9 414 81.9
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.4e-194 682.6 430 79.1
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.1e-194 681.8 445 78.9
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 5.4e-194 681.4 424 80.2
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 5.4e-194 681.4 425 80.7
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.0e-194 681.0 467 76.0
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 9.1e-194 680.6 428 79.2
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.2e-193 680.2 451 77.8
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.6e-193 679.9 461 75.9
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.7e-193 679.1 414 81.4
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 5.0e-192 674.9 424 80.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.9e-191 672.9 421 80.5
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.2e-191 671.8 445 78.0
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 7.2e-191 671.0 437 75.5
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.4e-189 666.8 447 76.7
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 4.0e-189 665.2 439 77.0
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 3.7e-187 658.7 463 71.5
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 2.4e-186 656.0 398 82.2
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 3.3e-183 645.6 408 80.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.1e-178 628.6 375 82.7
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.6e-172 609.4 444 68.2
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 4.1e-170 602.1 419 71.6
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.6e-169 598.6 430 70.0
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.2e-166 588.2 425 70.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 8.1e-166 587.8 445 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 4.0e-165 585.5 465 65.6
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.4e-164 582.0 360 79.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 8.3e-163 577.8 415 69.9
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.6e-158 563.5 440 64.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.8e-158 562.8 318 89.6
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.5e-151 540.4 315 86.7
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.6e-148 529.6 426 64.6
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 3.2e-122 443.0 310 75.8
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 2.9e-115 419.9 258 82.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 2.5e-114 416.8 269 79.6
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 3.6e-113 412.9 330 67.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.0e-112 409.8 258 80.6
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.3e-109 399.1 433 50.1
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 4.1e-101 372.9 224 81.7
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 5.3e-93 345.9 213 82.6
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.2e-91 340.5 201 85.6
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.0e-79 300.8 390 49.5
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.8e-75 286.6 229 69.0
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 2.5e-74 283.9 167 83.2
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 8.0e-73 278.9 158 84.8
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 5.2e-72 276.2 182 77.5
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.0e-63 247.7 410 39.5
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.3e-59 235.0 265 49.4
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 7.5e-55 219.2 218 56.0
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-53 214.9 208 58.2
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-52 211.8 208 56.7
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 6.6e-51 206.1 230 53.0
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 5.8e-47 193.0 206 52.9
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 8.4e-46 189.1 111 82.0
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 7.8e-44 182.6 189 56.6
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.7e-43 181.4 159 66.7
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.8e-41 174.1 110 78.2
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 5.8e-39 166.4 148 68.2
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-29 134.8 95 69.5
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 3.0e-27 127.5 76 80.3
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.5e-26 124.4 125 58.4
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.1e-24 119.0 78 70.5
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 9.9e-23 112.5 75 77.3
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.9e-21 108.2 111 46.8
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 3.2e-21 107.5 67 80.6
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 4.5e-15 87.0 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 7.6e-15 86.3 66 65.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 1.4e-13 82.0 53 77.4
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 1.0e-11 75.9 72 65.3
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 3.0e-11 74.3 197 33.0
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 5.1e-11 73.6 51 78.4
vmacro06073 Vaccinium macrocarpon HOM05D000331 ORTHO05D021523 1.5e-10 72.0 48 79.2
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 1.9e-10 71.6 48 77.1
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 3.3e-10 70.9 46 78.3
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.3e-09 68.9 69 59.4
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.1e-09 68.2 60 56.7
vmacro08382 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.1e-09 68.2 44 84.1
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 8.2e-09 66.2 82 53.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 2.0e-07 61.6 37 81.1
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 6.5e-06 56.6 31 80.6


User provided reference genes

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