Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 2.0e-130 469.2 250 100.0
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.6e-47 193.7 166 70.5
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 2.9e-36 156.4 152 66.4
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.2e-35 151.8 152 64.5
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 2.8e-31 139.8 156 55.8
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 7.7e-29 131.7 153 52.9
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 5.0e-28 129.0 151 60.3
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 1.5e-27 127.5 160 51.2
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 2.5e-27 126.7 153 54.9
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 7.2e-27 125.2 153 52.3
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 9.4e-27 124.8 158 51.3
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 1.2e-26 124.4 153 51.6
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.4e-25 120.9 155 54.2
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 4.0e-25 119.4 162 47.5
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 2.0e-24 117.1 158 50.0
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 2.6e-24 116.7 153 49.0
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 2.6e-24 116.7 167 47.9
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 3.3e-24 116.3 169 46.7
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 5.7e-24 115.5 158 50.0
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 5.7e-24 115.5 155 52.3
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 1.3e-23 114.4 172 45.9
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 1.3e-23 114.4 159 47.2
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 1.7e-23 114.0 160 46.2
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 1.7e-23 114.0 157 51.6
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 2.8e-23 113.2 155 49.7
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 6.3e-23 112.1 161 47.2
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 6.3e-23 112.1 157 49.0
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 8.2e-23 111.7 161 46.0
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 8.2e-23 111.7 156 50.0
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 8.2e-23 111.7 168 46.4
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 1.1e-22 111.3 102 60.8
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 2.4e-22 110.2 157 48.4
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 7.0e-22 108.6 152 47.4
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 1.2e-21 107.8 155 45.2
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 2.7e-21 106.7 154 53.2
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 3.5e-21 106.3 102 57.8
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 3.5e-21 106.3 90 66.7
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 4.5e-21 105.9 81 71.6
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 4.5e-21 105.9 152 47.4
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 1.3e-20 104.4 97 64.9
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 1.7e-20 104.0 157 50.3
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.7e-20 104.0 161 43.5
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 1.7e-20 104.0 152 49.3
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 2.2e-20 103.6 102 55.9
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 6.5e-20 102.1 152 50.7
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 6.5e-20 102.1 152 48.0
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 6.5e-20 102.1 102 57.8
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.1e-19 101.3 163 45.4
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 1.1e-19 101.3 162 42.6
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 1.5e-19 100.9 102 54.9
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 2.5e-19 100.1 154 47.4
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 4.2e-19 99.4 159 42.1
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 4.2e-19 99.4 164 44.5
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 7.2e-19 98.6 110 57.3
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 7.2e-19 98.6 158 43.7
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 9.4e-19 98.2 101 60.4
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 1.2e-18 97.8 100 57.0
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.2e-18 97.8 170 41.2
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.6e-18 97.4 103 57.3
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 2.7e-18 96.7 89 60.7
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 2.7e-18 96.7 161 42.2
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 3.6e-18 96.3 152 48.0
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 3.6e-18 96.3 160 44.4
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 6.1e-18 95.5 154 50.0
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 8.0e-18 95.1 153 45.8
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 1.0e-17 94.7 151 48.3
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 1.4e-17 94.4 154 44.8
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 2.3e-17 93.6 156 44.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 3.0e-17 93.2 152 46.7
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 5.2e-17 92.4 92 62.0
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 6.8e-17 92.0 120 50.8
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.5e-16 90.9 172 44.8
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 1.5e-16 90.9 159 41.5
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 2.6e-16 90.1 96 59.4
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 5.7e-16 89.0 164 43.3
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 5.7e-16 89.0 103 54.4
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 5.7e-16 89.0 161 48.4
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 7.5e-16 88.6 157 48.4
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 4.8e-15 85.9 160 44.4
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 8.3e-15 85.1 142 44.4
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 8.3e-15 85.1 156 43.6
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.1e-14 84.7 154 39.6
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 1.4e-14 84.3 155 43.2
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 1.8e-14 84.0 156 41.7
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 2.4e-14 83.6 156 39.1
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 3.1e-14 83.2 81 60.5
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 7.0e-14 82.0 152 42.1
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 7.0e-14 82.0 168 39.3
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 9.1e-14 81.6 153 44.4
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 9.1e-14 81.6 152 42.1
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 1.2e-13 81.3 156 45.5
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 1.6e-13 80.9 153 44.4
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 1.6e-13 80.9 153 44.4
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 2.0e-13 80.5 144 42.4
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 2.7e-13 80.1 127 43.3
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 2.7e-13 80.1 153 43.8
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 5.0e-12 75.9 153 42.5
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 6.5e-12 75.5 159 39.0
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 9.5e-11 71.6 163 33.1
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.6e-10 70.9 63 55.6
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 8.0e-10 68.6 163 33.7
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 3.0e-09 66.6 82 50.0
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 3.0e-09 66.6 71 49.3
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 4.0e-09 66.2 43 74.4
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 8.8e-09 65.1 89 49.4
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 5.7e-08 62.4 106 41.5
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 7.5e-08 62.0 191 38.2
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 1.7e-07 60.8 154 37.0
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 2.2e-07 60.5 165 32.7


User provided reference genes

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