Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 3.4e-167 591.7 309 100.0
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 3.1e-144 515.4 310 88.4
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.4e-125 453.4 310 78.1
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.7e-82 308.5 317 57.7
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 2.6e-66 256.5 305 50.8
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 4.1e-64 249.2 318 48.7
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 2.0e-63 246.9 327 48.9
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.1e-61 241.1 311 49.8
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 1.9e-61 240.4 317 45.4
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 3.2e-61 239.6 319 47.3
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.1e-60 236.9 316 45.9
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 4.7e-60 235.7 316 42.7
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 3.0e-59 233.0 333 43.2
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 4.0e-59 232.6 314 45.5
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.2e-58 231.1 235 56.6
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 2.0e-58 230.3 318 46.9
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 2.0e-58 230.3 317 45.7
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.3e-57 227.6 314 44.9
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 2.8e-57 226.5 316 45.6
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.3e-57 225.3 315 45.7
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.4e-56 224.2 294 44.2
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 4.1e-56 222.6 315 44.4
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 1.6e-55 220.7 312 42.9
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.0e-54 218.0 321 42.4
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.0e-54 218.0 321 42.4
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 1.9e-53 213.8 323 45.8
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 3.2e-53 213.0 315 42.2
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 9.4e-53 211.5 291 44.0
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.2e-52 211.1 320 45.6
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 2.7e-52 209.9 319 45.5
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 2.7e-52 209.9 325 43.7
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 3.6e-52 209.5 324 42.9
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 4.7e-52 209.1 322 41.6
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 8.0e-52 208.4 323 42.1
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 1.0e-51 208.0 322 42.9
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 6.8e-51 205.3 323 43.3
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 1.7e-49 200.7 317 43.8
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 2.4e-48 196.8 315 38.4
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 3.1e-48 196.4 319 40.8
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 3.1e-48 196.4 316 38.6
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 5.4e-48 195.7 315 40.0
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 1.6e-47 194.1 290 41.7
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 2.7e-47 193.4 281 40.2
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 5.9e-47 192.2 312 41.0
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 7.7e-47 191.8 298 38.9
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 1.7e-46 190.7 316 41.8
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 2.3e-46 190.3 325 39.4
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 2.3e-46 190.3 331 39.9
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 3.8e-46 189.5 308 43.2
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 3.3e-45 186.4 284 40.1
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 4.3e-45 186.0 305 37.4
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 2.1e-44 183.7 304 41.1
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 2.1e-44 183.7 313 39.6
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 2.8e-44 183.3 303 40.6
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 1.0e-43 181.4 324 39.5
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.8e-43 180.6 285 42.5
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 3.0e-43 179.9 319 38.2
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 3.0e-43 179.9 313 36.7
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 5.2e-43 179.1 282 42.6
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 1.5e-42 177.6 346 38.4
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 2.0e-42 177.2 319 38.2
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 5.7e-42 175.6 313 34.8
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 9.8e-42 174.9 319 37.9
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 2.2e-41 173.7 308 39.6
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 6.4e-41 172.2 318 36.8
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.4e-41 172.2 321 35.5
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 1.4e-40 171.0 309 38.8
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 2.4e-40 170.2 306 37.3
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.1e-40 169.5 312 41.3
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 5.4e-40 169.1 305 38.7
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 7.0e-40 168.7 310 36.5
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.2e-39 167.9 338 37.0
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.2e-39 167.9 321 34.3
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 4.6e-39 166.0 314 38.9
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 2.3e-38 163.7 287 38.7
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 3.0e-38 163.3 305 37.0
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 4.3e-37 159.5 291 34.4
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.3e-37 158.7 305 34.4
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 7.3e-37 158.7 305 34.4
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 2.8e-36 156.8 312 35.6
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 1.8e-35 154.1 317 39.7
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 4.4e-34 149.4 291 36.8
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 5.8e-34 149.1 313 35.5
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.3e-33 147.9 231 40.3
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.9e-33 146.0 305 35.4
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 8.3e-33 145.2 320 35.6
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 1.1e-32 144.8 294 33.3
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 2.7e-31 140.2 276 36.6
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 2.3e-30 137.1 286 37.8
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 3.9e-30 136.3 280 35.4
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 9.5e-29 131.7 307 32.2
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.1e-28 130.6 234 41.9
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.1e-28 130.6 234 41.9
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 2.8e-28 130.2 319 33.5
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.1e-27 128.3 325 33.5
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 3.1e-27 126.7 318 31.4
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 2.7e-23 113.6 238 34.9
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 1.7e-22 110.9 294 30.6
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.7e-22 110.9 305 32.5
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 8.6e-22 108.6 310 31.3
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.6e-20 104.4 143 44.1
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.8e-20 103.6 305 31.5
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 2.8e-20 103.6 342 28.7
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 5.8e-18 95.9 103 48.5
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.3e-14 84.7 292 27.7
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 7.3e-13 79.0 125 43.2
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 7.3e-13 79.0 313 26.2
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 2.1e-12 77.4 84 48.8
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 1.2e-10 71.6 302 25.2
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 1.2e-10 71.6 302 23.5
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 1.2e-10 71.6 302 25.2
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 1.5e-10 71.2 302 25.2
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 1.5e-10 71.2 302 24.5
Lalb_Chr10g0096721 Lupinus albus HOM05D002440 ORTHO05D002576 2.6e-10 70.5 310 23.9
Psat4g156680 Pisum sativum HOM05D002440 ORTHO05D002576 5.8e-10 69.3 326 23.6
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 9.9e-10 68.6 282 24.8
Medtr8g028710 Medicago truncatula HOM05D002440 ORTHO05D002576 9.9e-10 68.6 312 23.7
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 2.2e-09 67.4 301 24.6
SEGI_04278 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 4.9e-09 66.2 333 24.0
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 8.4e-09 65.5 302 24.2
Eucgr.D02314 Eucalyptus grandis HOM05D002440 ORTHO05D002576 1.1e-08 65.1 311 23.2
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 1.1e-08 65.1 309 23.6
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 1.4e-08 64.7 295 23.1
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 1.4e-08 64.7 315 23.8
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 2.4e-08 63.9 302 22.5
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 2.4e-08 63.9 302 22.5
RcHm_v2.0_Chr1g0357181 Rosa chinensis HOM05D002440 ORTHO05D002576 2.4e-08 63.9 303 24.8
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 3.2e-08 63.5 303 24.1
THA.LOC104817031 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 3.2e-08 63.5 300 23.3
Ca_23593_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 4.2e-08 63.2 312 24.7
Hund16666 Selenicereus undatus HOM05D002440 ORTHO05D002576 5.4e-08 62.8 306 23.9
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 7.1e-08 62.4 302 22.5
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 7.1e-08 62.4 312 25.3
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 7.1e-08 62.4 299 24.1
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 9.3e-08 62.0 209 24.9
TPR.G19397 Trifolium pratense HOM05D002440 ORTHO05D002576 9.3e-08 62.0 200 26.5
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 1.2e-07 61.6 314 24.5
CSS0042224 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 1.6e-07 61.2 304 25.3
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 3.5e-07 60.1 312 24.7
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 4.6e-07 59.7 107 34.6
Prupe.2G175300 Prunus persica HOM05D002440 ORTHO05D002576 4.6e-07 59.7 312 23.1
SGA_v2.0_scaffold4G02292 Striga asiatica HOM05D000137 ORTHO05D002576 4.6e-07 59.7 311 23.8
AUR62004397 Chenopodium quinoa HOM05D002440 ORTHO05D002576 6.0e-07 59.3 308 22.4
Ah.15g095810 Amaranthus hybridus HOM05D002440 ORTHO05D002576 7.8e-07 58.9 309 22.3
AUR62022603 Chenopodium quinoa HOM05D002440 ORTHO05D002576 7.8e-07 58.9 306 21.6
MD00G1111800 Malus domestica HOM05D002440 ORTHO05D002576 7.8e-07 58.9 312 23.4
CSS0006184 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 1.0e-06 58.5 288 24.0
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 1.0e-06 58.5 329 23.7
Duzib133G1249 Durio zibethinus HOM05D002440 ORTHO05D002576 1.0e-06 58.5 306 23.2
Lj9P587T61 Lonicera japonica HOM05D002440 ORTHO05D002576 1.0e-06 58.5 327 24.2
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 1.3e-06 58.2 204 26.0
Haze_15547 Corylus avellana HOM05D002440 ORTHO05D002576 1.7e-06 57.8 285 22.8
Gohir.A11G091300 Gossypium hirsutum HOM05D002440 ORTHO05D002576 1.7e-06 57.8 112 32.1
Potri.002G162600 Populus trichocarpa HOM05D002440 ORTHO05D002576 1.7e-06 57.8 308 23.7
Sabra02G0147900 Salix brachista HOM05D002440 ORTHO05D002576 1.7e-06 57.8 299 24.7
Sabra02G0148300 Salix brachista HOM05D002440 ORTHO05D002576 1.7e-06 57.8 299 24.7
THA.LOC104801398 Tarenaya hassleriana HOM05D002440 ORTHO05D002576 1.7e-06 57.8 116 31.0
Sabra14G0064400 Salix brachista HOM05D002440 ORTHO05D002576 2.3e-06 57.4 306 22.5
Sed0005808 Sechium edule HOM05D002440 ORTHO05D002576 2.3e-06 57.4 307 25.1
Ah.05g180270 Amaranthus hybridus HOM05D002440 ORTHO05D002576 3.0e-06 57.0 303 21.1
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 3.0e-06 57.0 312 25.3
Gohir.D11G097700 Gossypium hirsutum HOM05D002440 ORTHO05D002576 3.9e-06 56.6 108 32.4
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 5.1e-06 56.2 114 28.9
FvH4_7g15070 Fragaria vesca HOM05D002440 ORTHO05D002576 5.1e-06 56.2 119 30.3
FAN01G0399 Fragaria x ananassa HOM05D002440 ORTHO05D002576 5.1e-06 56.2 119 30.3
FAN06G2187 Fragaria x ananassa HOM05D002440 ORTHO05D002576 5.1e-06 56.2 119 30.3
FAN06G3166 Fragaria x ananassa HOM05D002440 ORTHO05D002576 5.1e-06 56.2 119 30.3
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 5.1e-06 56.2 109 30.3
TPR.G22299 Trifolium pratense HOM05D002440 ORTHO05D002576 5.1e-06 56.2 307 22.1
Zm00001eb043640 Zea mays HOM05D002440 ORTHO05D002576 5.1e-06 56.2 126 27.0
Aqoxy7G00236 Aquilegia oxysepala HOM05D002440 ORTHO05D002576 6.6e-06 55.8 309 22.7
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 6.6e-06 55.8 106 32.1
FAN10G0198 Fragaria x ananassa HOM05D002440 ORTHO05D002576 6.6e-06 55.8 119 30.3
FAN10G0706 Fragaria x ananassa HOM05D002440 ORTHO05D002576 6.6e-06 55.8 119 30.3
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 8.7e-06 55.5 116 27.6
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 8.7e-06 55.5 139 25.2
HPP92_015002 Vanilla planifolia HOM05D002440 ORTHO05D002576 8.7e-06 55.5 196 25.5


User provided reference genes

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