Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 2.7e-185 652.5 454 100.0
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 1.3e-166 590.5 414 94.9
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.3e-160 569.7 414 88.4
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.1e-154 550.8 414 89.4
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.1e-154 550.8 414 88.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.1e-153 546.6 414 89.6
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 5.2e-152 542.0 414 87.9
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.6e-151 539.7 397 88.4
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 7.5e-151 538.1 396 85.9
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.8e-149 533.5 396 89.1
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.4e-149 533.1 396 89.6
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 3.1e-149 532.7 396 89.1
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 4.1e-149 532.3 406 81.0
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 5.4e-149 531.9 405 87.7
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 9.1e-149 531.2 396 88.1
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.5e-148 529.3 409 84.8
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 7.7e-148 528.1 414 85.3
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 7.7e-148 528.1 414 76.3
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.0e-147 527.7 396 87.9
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.0e-147 527.7 396 87.9
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.0e-147 527.7 414 85.5
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.3e-147 527.3 396 75.3
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 5.0e-147 525.4 398 86.9
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 5.0e-147 525.4 414 80.4
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.5e-146 523.1 403 86.8
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.5e-146 523.1 407 87.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 5.5e-146 521.9 410 79.3
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 7.2e-146 521.5 396 88.4
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 9.5e-146 521.2 395 78.0
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 2.1e-145 520.0 395 88.4
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 3.6e-145 519.2 396 86.1
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 6.1e-145 518.5 414 85.3
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 8.0e-145 518.1 414 78.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 8.0e-145 518.1 414 78.5
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 8.0e-145 518.1 414 78.5
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 1.8e-144 516.9 415 80.7
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.3e-144 516.5 416 82.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.3e-144 516.5 395 88.1
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.0e-144 516.2 395 88.1
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.0e-144 515.8 428 69.6
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.2e-144 515.4 411 85.4
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 5.2e-144 515.4 395 87.6
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 6.8e-144 515.0 395 87.8
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.5e-143 513.8 413 76.0
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.5e-143 513.8 405 84.2
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 2.0e-143 513.5 396 87.1
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 4.4e-143 512.3 407 78.1
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 4.9e-142 508.8 398 84.9
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 6.3e-142 508.4 391 84.1
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.1e-141 507.7 396 85.6
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.4e-141 507.3 415 82.2
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 7.0e-141 505.0 405 84.2
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.6e-140 503.8 414 82.4
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 2.7e-140 503.1 414 81.9
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 4.5e-140 502.3 414 82.1
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.8e-140 501.5 395 84.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.9e-139 499.6 434 70.3
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.9e-139 499.6 434 70.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.9e-139 499.6 396 84.6
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.9e-139 499.6 398 72.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 2.5e-138 496.5 402 77.4
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 8.9e-136 488.0 392 84.7
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 5.7e-135 485.3 394 84.8
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 7.5e-135 485.0 409 81.4
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 2.9e-134 483.0 411 79.1
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.8e-133 480.3 411 70.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 7.0e-133 478.4 537 65.2
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.5e-132 476.1 414 71.0
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.3e-131 474.2 391 73.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 6.6e-131 471.9 413 69.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 9.5e-130 468.0 394 74.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 9.5e-130 468.0 391 71.4
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 2.8e-129 466.5 409 69.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 4.7e-129 465.7 394 78.2
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-128 464.5 513 65.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 1.4e-128 464.2 396 81.8
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.1e-128 463.0 395 77.0
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.1e-128 463.0 415 69.9
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 6.8e-128 461.8 392 68.4
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 6.8e-128 461.8 395 77.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 6.8e-128 461.8 395 72.2
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.8e-128 461.8 414 69.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.8e-128 461.8 415 69.6
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 6.8e-128 461.8 414 77.1
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.2e-127 461.1 392 79.3
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 2.0e-127 460.3 398 76.9
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 3.4e-127 459.5 390 77.7
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 5.8e-127 458.8 393 76.8
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 5.8e-127 458.8 393 76.8
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 5.8e-127 458.8 393 76.8
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 7.5e-127 458.4 391 77.7
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 9.8e-127 458.0 395 67.1
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 2.9e-126 456.4 395 77.2
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 8.3e-126 454.9 401 78.8
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.4e-125 452.2 431 66.6
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 4.6e-124 449.1 393 75.8
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 4.6e-124 449.1 393 75.8
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.3e-123 447.6 394 70.6
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 3.9e-123 446.0 388 78.6
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.5e-122 443.4 414 77.1
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 4.3e-122 442.6 414 76.8
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 5.6e-122 442.2 414 76.3
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 2.1e-121 440.3 365 82.5
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.3e-120 436.8 407 68.6
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 3.2e-117 426.4 426 63.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 2.1e-116 423.7 414 65.0
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.8e-112 410.6 394 73.1
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.8e-112 408.7 396 57.3
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 4.4e-111 406.0 396 68.2
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.2e-108 397.9 410 57.8
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 3.9e-107 392.9 391 68.3
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-106 389.8 408 54.9
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 9.6e-106 388.3 394 59.4
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-104 384.4 419 56.6
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 4.0e-104 382.9 429 57.8
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 5.2e-104 382.5 402 58.2
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.0e-103 380.6 391 66.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 2.6e-103 380.2 370 63.2
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 9.9e-103 378.3 391 73.9
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 6.4e-102 375.6 392 56.6
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-101 373.6 403 56.8
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.4e-101 373.6 403 56.8
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 3.2e-101 373.2 403 56.8
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-100 371.3 428 54.7
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 5.6e-98 362.5 447 47.9
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 3.1e-96 356.7 409 54.5
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.3e-96 355.9 314 76.8
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 4.5e-87 326.2 403 50.4
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.9e-86 323.6 387 51.4
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.5e-84 316.6 375 55.2
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 4.6e-84 316.2 246 81.7
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 1.3e-83 314.7 335 61.8
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-77 294.3 386 45.9
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.2e-76 291.6 416 48.3
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-73 280.8 387 43.2
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.5e-71 273.1 294 77.6
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 5.5e-69 266.2 198 65.7
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 9.7e-66 255.4 252 63.1
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.5e-63 248.1 194 64.9
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.6e-63 247.3 398 41.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-62 244.6 254 58.3
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.5e-61 240.7 254 57.9
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 4.7e-60 236.5 388 47.4
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.3e-51 207.6 100 97.0
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.0e-51 207.2 121 84.3
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.7e-46 191.4 131 74.0
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.7e-46 191.4 100 87.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 3.8e-46 190.3 167 57.5
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-44 185.3 167 57.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 5.2e-43 179.9 88 92.0
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 5.3e-40 169.9 414 37.2
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 3.7e-33 147.1 101 66.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 1.6e-31 141.7 95 70.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 3.5e-31 140.6 140 55.0
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-30 138.7 95 70.5
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 5.5e-29 133.3 183 45.9
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.6e-26 124.4 80 73.8
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 4.4e-26 123.6 81 72.8
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.4e-26 123.6 299 37.8
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 4.9e-25 120.2 58 91.4
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 7.0e-24 116.3 81 67.9
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.8e-20 104.4 50 84.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 3.0e-19 100.9 67 68.7
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 1.5e-18 98.6 70 62.9
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.7e-17 95.1 63 69.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.4e-16 92.0 44 93.2
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 9.2e-16 89.4 45 86.7
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 9.2e-16 89.4 43 93.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 6.0e-15 86.7 43 88.4
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 7.8e-15 86.3 120 61.7
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.7e-14 85.1 45 84.4
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 8.6e-14 82.8 41 92.7
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 8.6e-14 82.8 41 92.7
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 6.2e-12 76.6 45 77.8
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 4.0e-11 73.9 38 84.2
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.6e-10 71.2 47 61.7
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 5.8e-10 70.1 47 59.6
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.1e-08 65.9 40 72.5
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.4e-08 65.5 60 58.3
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 6.0e-07 60.1 83 41.0
Actinidia18910 Actinidia chinensis HOM05D002288 ORTHO05D002894 5.1e-06 57.0 76 36.8
Cre08.g367650 Chlamydomonas reinhardtii HOM05D009278 ORTHO05D002685 8.6e-06 56.2 41 63.4


User provided reference genes

Program Settings