Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.0e-170 603.2 289 100.0
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 1.4e-82 310.5 228 73.2
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 6.1e-54 215.3 226 54.9
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 7.0e-34 148.7 229 45.9
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.4e-29 134.4 237 40.1
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 1.3e-19 101.3 229 35.8
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 1.1e-18 98.2 227 36.6
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.2e-17 94.7 225 34.7
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 1.6e-17 94.4 232 33.2
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 3.0e-16 90.1 298 30.2
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 5.1e-16 89.4 298 30.2
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 1.8e-13 80.9 197 35.5
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 3.1e-13 80.1 215 30.2
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 6.8e-13 79.0 228 30.7
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 8.9e-13 78.6 200 34.5
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 7.6e-12 75.5 241 31.5
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.3e-11 74.7 198 32.3
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.3e-11 74.7 198 32.3
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 1.3e-11 74.7 199 33.7
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 2.2e-11 73.9 206 32.0
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 2.9e-11 73.6 198 34.3
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 2.9e-11 73.6 206 32.0
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 6.4e-11 72.4 57 66.7
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 1.4e-10 71.2 198 31.8
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 4.2e-10 69.7 55 69.1
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 9.3e-10 68.6 53 66.0
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 1.2e-09 68.2 200 33.0
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 4.6e-09 66.2 215 31.2
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.3e-08 64.7 242 31.0
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 2.3e-08 63.9 206 29.6
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 3.0e-08 63.5 242 31.0
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 3.0e-08 63.5 222 28.4
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 3.0e-08 63.5 203 31.0
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.0e-08 63.5 215 32.1
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 6.6e-08 62.4 222 29.3
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 6.6e-08 62.4 218 29.4
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 1.1e-07 61.6 51 62.7
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 1.5e-07 61.2 212 29.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 1.9e-07 60.8 219 29.7
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 3.3e-07 60.1 241 28.6
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 9.6e-07 58.5 220 29.5
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 9.6e-07 58.5 191 31.9
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 2.1e-06 57.4 70 50.0
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 2.1e-06 57.4 170 31.8
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 3.6e-06 56.6 247 26.7
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 6.2e-06 55.8 39 66.7
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 6.2e-06 55.8 64 50.0
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 8.1e-06 55.5 51 52.9


User provided reference genes

Program Settings