Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.2e-205 716.8 365 100.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.6e-158 562.4 367 79.8
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.1e-138 495.0 375 70.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.6e-138 494.2 375 70.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 7.6e-126 454.5 373 65.1
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.2e-117 426.4 370 62.7
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 4.9e-117 425.2 327 68.2
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.2e-108 396.0 359 61.6
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 7.1e-108 394.8 376 61.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.3e-106 390.6 382 58.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.2e-101 373.2 379 58.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 8.4e-101 371.3 379 58.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 5.5e-100 368.6 371 56.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.0e-99 365.2 360 57.5
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.3e-96 357.5 373 55.0
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 8.2e-96 354.8 368 54.9
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.5e-94 349.0 373 53.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.5e-94 349.0 373 53.6
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.5e-94 349.0 379 54.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.7e-93 347.1 377 54.1
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 7.2e-92 341.7 390 50.0
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 9.3e-92 341.3 385 52.2
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 3.3e-89 332.8 408 50.2
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 9.7e-89 331.3 379 53.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.2e-88 330.1 378 50.0
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-88 329.7 259 62.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.4e-87 327.4 387 51.7
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.5e-86 323.9 385 51.4
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.6e-86 323.2 411 49.9
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.4e-86 322.8 387 50.9
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 5.9e-86 322.0 410 49.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 5.9e-86 322.0 373 51.2
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 7.7e-86 321.6 374 48.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 7.7e-86 321.6 380 51.8
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.0e-85 321.2 381 52.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 6.5e-85 318.5 408 48.3
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.1e-84 317.8 388 50.0
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.9e-84 317.0 384 49.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.4e-84 314.7 377 50.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.2e-83 314.3 379 50.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.7e-83 313.2 392 49.5
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-82 310.5 364 53.3
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.0e-82 309.7 375 49.1
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.0e-81 307.0 371 49.9
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.0e-81 307.0 385 49.9
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 5.7e-81 305.4 391 50.6
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 7.4e-81 305.1 380 49.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 7.4e-81 305.1 370 50.8
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.3e-80 304.3 379 50.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-80 303.9 385 50.4
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.8e-80 302.4 378 48.7
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 6.3e-80 302.0 398 47.2
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 8.2e-80 301.6 407 47.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.2e-78 297.7 404 48.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.0e-78 297.0 388 46.4
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.0e-78 297.0 408 47.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.4e-78 296.2 413 45.5
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 5.9e-78 295.4 378 48.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-77 293.9 412 45.1
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.9e-77 293.1 378 48.1
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 4.2e-76 289.3 422 45.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.5e-76 288.9 376 48.7
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 4.7e-75 285.8 384 46.6
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.4e-74 284.3 377 47.2
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.4e-74 284.3 423 45.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.8e-74 283.9 381 48.3
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.0e-74 283.1 418 45.0
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.1e-74 282.3 370 48.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.6e-73 280.0 364 48.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 7.4e-73 278.5 311 52.4
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 9.7e-73 278.1 370 48.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-72 277.7 396 45.7
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.4e-71 273.5 394 47.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.1e-71 273.1 378 44.7
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.1e-71 273.1 393 47.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.2e-70 271.2 377 45.6
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.5e-70 269.6 400 44.0
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.5e-70 269.2 371 48.0
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 7.7e-70 268.5 380 45.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.0e-69 268.1 333 48.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.0e-69 265.8 374 44.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.5e-69 265.4 400 43.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 6.5e-69 265.4 391 46.8
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.5e-68 264.2 332 49.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.6e-67 259.6 375 46.7
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.3e-66 256.9 399 41.9
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.3e-65 253.1 367 46.0
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-63 247.3 270 54.8
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.1e-63 245.0 371 43.4
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.2e-62 244.6 400 41.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 3.5e-62 243.0 382 44.0
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.7e-61 240.7 398 42.7
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.2e-61 240.4 404 41.6
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 3.8e-61 239.6 402 42.5
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.1e-60 238.0 402 42.0
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.1e-60 238.0 368 44.3
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.5e-60 235.7 318 48.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 5.7e-57 225.7 401 41.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.8e-57 224.9 399 41.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-56 224.2 401 40.9
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.7e-56 224.2 401 40.9
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.2e-56 223.8 414 40.6
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.8e-56 223.4 398 40.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.0e-55 218.8 374 40.4
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.6e-54 217.6 402 40.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 7.7e-54 215.3 383 41.8
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 8.5e-53 211.8 409 36.4
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.2e-52 209.9 277 47.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.6e-49 200.3 409 38.6
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 4.4e-49 199.5 408 38.7
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.7e-48 196.4 408 38.5
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.9e-48 196.1 253 49.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.0e-45 188.3 383 38.4
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-44 184.1 405 37.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.5e-44 183.7 406 37.7
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 4.3e-44 183.0 406 37.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 9.5e-44 181.8 252 45.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.2e-41 174.9 249 42.2
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.7e-40 171.0 247 42.9
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.1e-39 168.3 244 42.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.1e-39 168.3 243 42.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 7.0e-39 165.6 243 42.4
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.7e-38 163.7 192 49.5
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.5e-38 163.3 237 43.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 4.6e-38 162.9 244 42.2
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.7e-37 161.0 372 33.6
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 6.6e-37 159.1 245 43.3
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.5e-36 157.9 215 41.4
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.2e-35 154.8 245 42.0
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-35 153.7 246 39.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 8.0e-35 152.1 249 40.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 8.0e-35 152.1 245 40.8
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.0e-34 151.8 215 42.3
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.0e-34 151.8 392 34.4
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.8e-34 149.1 327 38.5
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.2e-33 148.3 208 44.2
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-33 147.5 249 38.6
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.0e-33 147.5 248 41.1
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.4e-33 146.7 232 40.1
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.4e-33 146.7 256 37.5
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 4.4e-33 146.4 416 34.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.8e-33 145.2 268 40.7
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.8e-33 145.2 246 40.7
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-32 144.8 197 43.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.3e-32 144.8 223 38.6
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.4e-31 141.4 378 32.0
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.4e-31 140.6 234 42.3
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 5.4e-31 139.4 247 40.5
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.0e-31 139.0 248 39.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 9.2e-31 138.7 243 38.7
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.0e-30 137.5 200 45.5
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.7e-29 134.4 257 36.6
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 3.0e-29 133.7 255 37.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.0e-29 133.7 416 32.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.1e-27 127.5 234 38.9
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.6e-27 126.7 323 33.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 3.2e-23 113.6 89 57.3
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.1e-21 106.3 146 50.0
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.9e-20 104.4 158 46.8
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.6e-20 102.8 123 49.6
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.2e-19 99.4 218 39.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.4e-16 89.0 155 36.1
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 8.4e-16 89.0 155 36.1
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.4e-15 87.4 191 30.9
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.2e-15 87.0 387 25.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 4.1e-15 86.7 119 47.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 7.1e-15 85.9 47 76.6
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.2e-15 85.5 116 41.4
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 4.6e-14 83.2 180 35.6
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.8e-10 69.3 51 62.7
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.8e-09 66.2 149 39.6


User provided reference genes

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