Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.1e-273 944.5 464 100.0
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.7e-176 622.5 456 74.8
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.5e-139 500.4 429 64.1
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 8.7e-135 484.6 428 63.1
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.5e-134 483.8 428 62.9
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.3e-133 480.7 390 67.4
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.2e-131 474.2 429 61.3
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 7.6e-131 471.5 429 61.3
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.1e-129 467.6 427 60.7
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.1e-129 467.6 426 61.7
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-129 466.5 429 61.3
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.2e-129 466.1 422 60.9
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.2e-129 465.7 430 61.9
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 7.1e-129 464.9 429 60.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 7.1e-129 464.9 427 59.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.5e-128 462.6 425 61.6
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.6e-128 462.2 435 60.0
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.0e-128 461.8 429 60.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 6.0e-128 461.8 424 60.8
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.8e-127 460.3 424 60.4
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 6.7e-127 458.4 431 58.5
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.1e-126 457.6 422 61.4
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.5e-126 457.2 422 60.0
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.9e-126 456.8 429 61.3
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.5e-126 456.4 429 60.1
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 9.6e-126 454.5 422 59.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.3e-125 454.1 428 60.3
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.8e-125 453.0 422 58.8
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 4.8e-125 452.2 430 58.4
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 6.2e-125 451.8 422 58.8
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 8.1e-125 451.4 431 58.2
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.1e-124 451.1 429 58.5
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-124 451.1 427 60.4
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.1e-124 449.5 424 59.7
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.0e-124 449.1 429 59.2
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 4.0e-124 449.1 418 58.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 6.9e-124 448.4 390 63.3
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.2e-123 447.6 422 59.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.4e-123 446.0 424 59.4
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 3.4e-123 446.0 426 56.6
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.0e-122 444.5 429 59.2
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.3e-122 444.1 430 57.7
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.2e-122 443.4 423 59.1
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.2e-122 443.4 445 55.1
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.8e-122 442.6 422 58.3
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.5e-121 438.7 445 57.5
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.1e-120 436.8 427 59.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.1e-120 436.8 421 59.1
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.7e-120 436.4 430 57.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 3.9e-119 432.6 433 56.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.9e-119 432.6 389 61.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 5.1e-119 432.2 426 57.5
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.9e-118 430.3 389 60.9
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.9e-118 430.3 427 55.3
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.5e-118 429.9 420 56.4
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 3.3e-118 429.5 423 57.0
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.3e-118 429.1 438 55.5
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 4.3e-118 429.1 389 60.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 4.3e-118 429.1 427 55.0
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 7.4e-118 428.3 424 57.5
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 9.6e-118 427.9 424 57.5
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.6e-117 427.2 418 57.9
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 5.3e-116 422.2 420 56.0
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.2e-115 421.0 431 56.6
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.2e-115 421.0 414 57.2
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.5e-115 420.6 423 53.4
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.2e-114 416.8 420 55.7
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.2e-113 412.9 420 55.5
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.2e-113 412.5 383 54.6
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 9.3e-113 411.4 390 58.2
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.2e-112 411.0 421 52.5
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.6e-112 410.6 385 59.7
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.1e-112 410.2 494 50.0
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.7e-112 409.8 383 59.5
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.9e-111 406.0 419 54.4
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 8.7e-111 404.8 422 55.9
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.5e-110 404.1 398 56.8
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.5e-110 404.1 407 55.8
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.5e-110 404.1 425 55.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 7.4e-110 401.7 425 55.5
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.6e-109 400.6 407 55.3
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.6e-109 400.6 423 55.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.6e-109 400.6 423 56.0
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 2.8e-109 399.8 394 57.6
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 4.8e-109 399.1 421 53.7
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.8e-108 397.1 420 50.7
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 6.9e-108 395.2 420 54.0
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.5e-107 394.0 389 57.6
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.5e-107 392.5 449 48.8
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.7e-107 391.7 425 53.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.6e-104 384.0 420 52.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.4e-103 380.9 386 56.2
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.3e-103 380.2 384 56.2
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.9e-103 379.4 420 52.4
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.5e-102 377.5 420 52.1
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.7e-102 375.6 261 67.4
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.7e-101 374.0 400 53.2
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.1e-100 371.3 228 72.8
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.4e-100 370.9 385 55.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 4.1e-100 369.4 383 54.0
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 9.1e-100 368.2 385 56.1
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-99 367.9 383 54.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.5e-99 365.9 426 51.9
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 5.9e-99 365.5 295 59.3
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.0e-98 364.8 310 55.8
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 1.7e-98 364.0 219 73.1
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.2e-98 363.6 384 53.4
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.9e-98 363.2 422 52.4
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.0e-98 362.5 280 60.7
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 5.0e-98 362.5 299 59.2
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.2e-97 359.8 228 69.7
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 4.2e-97 359.4 221 71.9
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 9.4e-97 358.2 284 60.6
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.7e-96 356.7 288 59.7
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.1e-94 351.3 426 52.3
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.5e-94 350.9 428 46.3
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.0e-94 350.5 341 54.5
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 2.6e-94 350.1 361 56.8
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 4.5e-91 339.3 407 49.4
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.0e-90 338.2 409 44.3
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.0e-90 338.2 359 56.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 5.0e-90 335.9 342 52.9
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.5e-90 335.5 217 69.6
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.5e-89 334.3 230 67.4
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.5e-89 333.6 386 53.1
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.2e-87 325.9 353 55.0
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 8.8e-87 325.1 205 67.3
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.7e-86 321.6 413 50.1
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 1.8e-84 317.4 252 59.9
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.5e-83 312.8 420 44.3
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.5e-82 308.9 354 54.0
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 6.5e-82 308.9 383 48.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.6e-80 304.3 420 46.0
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.0e-79 299.7 402 44.0
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.2e-78 298.1 381 44.4
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.5e-78 297.7 386 42.5
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 2.0e-78 297.4 264 55.3
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.1e-76 291.6 187 69.5
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.8e-76 290.8 254 55.9
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 3.8e-74 283.1 420 41.7
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 6.1e-72 275.8 388 45.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.8e-71 274.2 385 46.5
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.5e-70 271.2 386 45.6
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-70 270.8 388 45.1
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 5.7e-70 269.2 389 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 6.3e-69 265.8 376 44.4
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 2.7e-67 260.4 392 44.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 7.7e-67 258.8 387 43.4
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 7.7e-67 258.8 385 44.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.9e-66 256.9 387 43.7
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 6.6e-66 255.8 392 42.9
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 2.5e-65 253.8 390 44.1
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 2.1e-64 250.8 389 43.7
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.1e-64 249.2 390 41.5
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.2e-63 246.1 228 53.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 4.7e-56 223.0 220 45.0
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.2e-51 208.4 241 42.7
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 2.3e-50 204.1 113 83.2
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.6e-50 202.6 387 38.2
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 9.5e-49 198.7 393 38.4
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.6e-48 196.8 205 48.8
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 6.2e-48 196.1 114 81.6
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.3e-47 194.1 129 66.7
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.8e-40 170.6 93 79.6
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 3.6e-16 90.5 103 38.8
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 2.2e-13 81.3 38 89.5
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.9e-13 80.9 48 72.9
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 3.8e-13 80.5 71 66.2
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 7.9e-11 72.8 46 76.1
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.1e-09 68.9 47 76.6
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 2.8e-08 64.3 69 55.1
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 3.7e-08 63.9 37 78.4
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 1.1e-07 62.4 44 70.5
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 1.1e-07 62.4 44 70.5
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 3.1e-07 60.8 50 62.0
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 3.1e-07 60.8 48 64.6
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 7.6e-06 56.2 42 66.7


User provided reference genes

Program Settings