Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.7e-183 646.0 360 100.0
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 5.2e-79 298.9 360 57.5
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 1.6e-51 207.6 366 51.9
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 5.3e-31 139.4 104 75.0
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 1.2e-30 138.3 104 72.1
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 2.0e-30 137.5 104 75.0
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 2.0e-30 137.5 104 73.1
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 2.6e-30 137.1 104 74.0
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 7.7e-30 135.6 103 70.9
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 2.2e-29 134.0 104 69.2
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 2.9e-29 133.7 104 71.2
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.9e-29 133.7 236 43.6
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.8e-29 133.3 104 68.3
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 5.0e-29 132.9 104 68.3
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 5.0e-29 132.9 104 70.2
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 5.0e-29 132.9 103 69.9
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 6.5e-29 132.5 104 71.2
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.5e-29 132.1 104 67.3
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 8.5e-29 132.1 101 73.3
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 8.5e-29 132.1 104 69.2
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 1.1e-28 131.7 104 66.3
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 1.4e-28 131.3 104 70.2
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 2.5e-28 130.6 104 67.3
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 2.5e-28 130.6 103 68.0
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 3.2e-28 130.2 104 68.3
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 4.2e-28 129.8 104 69.2
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 5.5e-28 129.4 104 69.2
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 5.5e-28 129.4 104 66.3
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 5.5e-28 129.4 104 66.3
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 5.5e-28 129.4 104 66.3
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 5.5e-28 129.4 100 71.0
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 7.2e-28 129.0 104 68.3
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 7.2e-28 129.0 104 68.3
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 7.2e-28 129.0 104 68.3
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 7.2e-28 129.0 234 41.0
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 7.2e-28 129.0 104 68.3
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 9.4e-28 128.6 104 66.3
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.2e-27 128.3 104 69.2
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.2e-27 128.3 281 45.9
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 1.2e-27 128.3 104 68.3
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 1.2e-27 128.3 104 68.3
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.6e-27 127.9 104 68.3
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 2.1e-27 127.5 104 67.3
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.1e-27 127.5 104 66.3
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 2.1e-27 127.5 101 69.3
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 2.7e-27 127.1 101 69.3
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 2.7e-27 127.1 101 67.3
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 2.7e-27 127.1 101 65.3
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 2.7e-27 127.1 101 69.3
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 3.6e-27 126.7 101 67.3
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 6.1e-27 125.9 104 67.3
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 6.1e-27 125.9 104 67.3
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 6.1e-27 125.9 104 67.3
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 6.1e-27 125.9 104 67.3
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 6.1e-27 125.9 104 66.3
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 7.9e-27 125.6 104 65.4
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 7.9e-27 125.6 104 67.3
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 7.9e-27 125.6 104 65.4
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 7.9e-27 125.6 103 65.0
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.0e-26 125.2 104 62.5
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 1.0e-26 125.2 98 70.4
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.4e-26 124.8 102 67.6
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 1.4e-26 124.8 104 65.4
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.8e-26 124.4 104 66.3
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 1.8e-26 124.4 100 69.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 2.3e-26 124.0 104 62.5
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 2.3e-26 124.0 104 62.5
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 3.0e-26 123.6 102 65.7
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 5.1e-26 122.9 103 63.1
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 8.8e-26 122.1 104 67.3
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 8.8e-26 122.1 102 64.7
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.1e-25 121.7 103 63.1
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.1e-25 121.7 103 63.1
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 1.5e-25 121.3 104 60.6
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-25 120.6 103 62.1
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 2.6e-25 120.6 104 64.4
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 4.4e-25 119.8 101 63.4
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 5.7e-25 119.4 103 62.1
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 9.7e-25 118.6 104 60.6
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 9.7e-25 118.6 101 66.3
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 9.7e-25 118.6 104 65.4
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 2.2e-24 117.5 104 63.5
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 2.2e-24 117.5 104 60.6
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 2.2e-24 117.5 104 64.4
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 6.3e-24 115.9 104 60.6
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 6.3e-24 115.9 101 64.4
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 6.3e-24 115.9 104 59.6
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 1.8e-23 114.4 101 61.4
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.4e-23 114.0 103 60.2
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 2.4e-23 114.0 104 57.7
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 3.1e-23 113.6 101 64.4
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.1e-23 113.2 101 63.4
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.1e-23 113.2 101 63.4
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 7.0e-23 112.5 104 57.7
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.6e-22 111.3 104 54.8
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 1.6e-22 111.3 101 62.4
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 1.6e-22 111.3 104 58.7
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 2.6e-22 110.5 101 62.4
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 55.8
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 56.7
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 56.7
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 56.7
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 56.7
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 56.7
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 5.9e-22 109.4 104 56.7
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 5.9e-22 109.4 97 63.9
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 7.7e-22 109.0 104 56.7
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.0e-21 108.6 104 54.8
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 1.7e-21 107.8 104 52.9
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 5.0e-21 106.3 104 55.8
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 5.0e-21 106.3 104 53.8
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 5.0e-21 106.3 104 55.8
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 5.0e-21 106.3 103 53.4
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 5.0e-21 106.3 100 56.0
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 6.5e-21 105.9 104 54.8
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.5e-21 105.5 101 56.4
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 8.5e-21 105.5 104 55.8
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 8.5e-21 105.5 101 57.4
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.9e-20 104.4 104 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 2.5e-20 104.0 100 53.0
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 3.6e-19 100.1 101 53.5
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 1.8e-18 97.8 104 54.8
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 2.0e-17 94.4 101 47.5
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.6e-17 94.0 101 53.5
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 5.7e-17 92.8 101 52.5
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 9.7e-17 92.0 101 51.5
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 9.7e-17 92.0 101 51.5
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 9.7e-17 92.0 101 51.5
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 9.7e-17 92.0 101 51.5
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 9.7e-17 92.0 101 51.5
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 9.7e-17 92.0 101 51.5
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.3e-16 91.7 101 51.5
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 2.8e-16 90.5 101 51.5
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.7e-16 90.1 101 49.5
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 6.3e-16 89.4 101 51.5
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.2e-14 85.1 95 52.6
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 3.8e-13 80.1 101 43.6
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 4.1e-07 60.1 106 44.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 4.1e-07 60.1 106 44.3
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 7.0e-07 59.3 101 41.6
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 1.2e-06 58.5 106 43.4
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 1.6e-06 58.2 106 42.5
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 2.0e-06 57.8 47 70.2
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 2.7e-06 57.4 101 39.6
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 2.7e-06 57.4 45 62.2
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 3.5e-06 57.0 105 42.9
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 3.5e-06 57.0 105 42.9
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 3.5e-06 57.0 103 40.8
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 5.9e-06 56.2 101 39.6
AL1G58480 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 7.7e-06 55.8 101 41.6


User provided reference genes

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