Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13422 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.0e-175 619.0 312 100.0
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 6.0e-63 245.4 279 55.2
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.9e-57 225.7 279 49.5
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.9e-57 225.7 279 49.5
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 9.2e-56 221.5 279 50.9
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 1.2e-55 221.1 191 65.4
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 1.7e-54 217.2 280 50.0
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 3.0e-54 216.5 280 50.0
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 4.7e-52 209.1 277 48.7
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 5.2e-51 205.7 284 46.8
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.2e-50 204.5 279 48.0
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 9.9e-50 201.4 279 47.3
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 2.2e-49 200.3 277 48.0
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 2.2e-49 200.3 279 46.2
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 2.2e-49 200.3 279 47.3
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.9e-49 199.9 279 48.0
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 3.8e-49 199.5 278 46.4
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 3.8e-49 199.5 283 46.6
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 4.9e-49 199.1 279 45.5
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 4.9e-49 199.1 279 43.7
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 6.4e-49 198.7 333 40.5
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 8.4e-49 198.4 281 45.2
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 1.4e-48 197.6 279 45.5
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 1.4e-48 197.6 281 44.1
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 3.2e-48 196.4 284 45.8
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 4.1e-48 196.1 287 43.9
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 5.4e-48 195.7 279 43.0
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 9.2e-48 194.9 292 46.9
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 2.7e-47 193.4 279 45.2
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 3.5e-47 193.0 279 44.8
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.0e-47 192.2 278 44.6
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 6.0e-47 192.2 280 44.6
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 7.8e-47 191.8 278 44.6
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.8e-47 191.8 290 43.4
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 1.0e-46 191.4 277 44.4
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 1.0e-46 191.4 279 42.3
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 1.3e-46 191.0 279 44.1
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.3e-46 190.3 278 44.2
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.3e-46 190.3 278 44.2
MBI17_g08173_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 6.6e-46 188.7 303 42.9
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 1.9e-45 187.2 278 42.8
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 1.9e-45 187.2 279 41.6
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 1.2e-44 184.5 279 43.0
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 1.2e-44 184.5 275 44.4
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 1.6e-44 184.1 280 44.3
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 2.1e-44 183.7 282 42.9
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 2.1e-44 183.7 201 55.7
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 4.7e-44 182.6 278 41.4
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 4.7e-44 182.6 280 43.2
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 8.1e-44 181.8 278 42.8
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 1.1e-43 181.4 281 42.0
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 3.1e-43 179.9 280 42.5
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 5.2e-43 179.1 278 41.4
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 6.9e-43 178.7 282 41.5
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 8.9e-43 178.3 279 43.7
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 1.2e-42 177.9 281 42.3
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 1.2e-42 177.9 286 41.6
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 2.6e-42 176.8 276 42.8
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 4.4e-42 176.0 281 40.6
Nitab4.5_0010110g0020 Nicotiana tabacum HOM05D004612 ORTHO05D004940 4.4e-42 176.0 278 42.8
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 5.8e-42 175.6 288 39.6
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 9.9e-42 174.9 281 39.9
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 1.3e-41 174.5 289 40.8
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 2.2e-41 173.7 283 39.9
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 2.9e-41 173.3 281 40.6
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 2.9e-41 173.3 279 41.9
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 4.9e-41 172.6 277 41.9
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 4.9e-41 172.6 275 41.1
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 8.4e-41 171.8 285 40.0
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 1.1e-40 171.4 277 43.0
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 3.2e-40 169.9 191 53.4
ATR0680G383 Amborella trichopoda HOM05D004612 ORTHO05D004940 4.2e-40 169.5 279 40.1
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 4.2e-40 169.5 191 50.8
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 7.1e-40 168.7 279 40.1
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 9.3e-40 168.3 275 41.1
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 1.2e-39 167.9 281 38.4
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 1.6e-39 167.5 282 40.8
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 1.6e-39 167.5 284 40.5
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 1.6e-39 167.5 281 41.3
Peaxi162Scf00397g00041 Petunia axillaris HOM05D004612 ORTHO05D004940 3.5e-39 166.4 267 41.6
AUR62004317 Chenopodium quinoa HOM05D004612 ORTHO05D004940 4.6e-39 166.0 291 39.9
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 4.6e-39 166.0 279 40.9
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 6.0e-39 165.6 282 40.1
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 6.0e-39 165.6 277 40.1
vmacro13310 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 7.8e-39 165.2 153 60.8
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 1.3e-38 164.5 282 40.1
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.7e-38 164.1 291 39.2
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 2.3e-38 163.7 283 40.3
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.9e-37 160.6 271 40.6
Sp6g00630 Schrenkiella parvula HOM05D004612 ORTHO05D004940 2.5e-37 160.2 281 38.4
BcaB01g02263 Brassica carinata HOM05D004612 ORTHO05D004940 7.3e-37 158.7 275 40.0
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 2.8e-36 156.8 282 40.1
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 6.2e-36 155.6 289 39.1
Peaxi162Scf00246g01122 Petunia axillaris HOM05D004612 ORTHO05D004940 8.1e-36 155.2 188 50.0
Os04g0682500 Oryza sativa ssp. japonica HOM05D004612 ORTHO05D004940 1.1e-35 154.8 273 37.7
CARHR248760 Cardamine hirsuta HOM05D004612 ORTHO05D004940 1.4e-35 154.5 285 36.8
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 1.4e-35 154.5 271 40.2
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 1.8e-35 154.1 278 39.2
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 4.0e-35 152.9 274 37.6
Zm00001eb433970 Zea mays HOM05D004612 ORTHO05D004940 2.0e-34 150.6 274 38.3
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 3.4e-34 149.8 276 38.0
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 7.6e-34 148.7 279 37.3
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 2.2e-33 147.1 279 36.9
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 6.4e-33 145.6 279 37.3
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.4e-33 145.2 262 39.7
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.4e-32 143.7 180 50.6
vmacro13311 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 4.2e-32 142.9 281 38.1
BcaNung05358 Brassica carinata HOM05D004612 ORTHO05D004940 2.1e-31 140.6 278 34.9
PGSC0003DMG400021637 Solanum tuberosum HOM05D004612 ORTHO05D004940 2.7e-31 140.2 170 51.2
AUR62023440 Chenopodium quinoa HOM05D004612 ORTHO05D004940 6.0e-31 139.0 263 37.6
AUR62033327 Chenopodium quinoa HOM05D004612 ORTHO05D004940 6.0e-31 139.0 263 37.6
Atru.chr5.445 Acer truncatum HOM05D004612 ORTHO05D004940 2.3e-30 137.1 169 49.7
CDE05G3327 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 3.9e-30 136.3 175 46.9
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 9.6e-29 131.7 166 48.8
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 3.1e-27 126.7 182 43.4
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 4.0e-27 126.3 278 35.6
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 2.6e-26 123.6 280 36.1
Gohir.D02G148550 Gossypium hirsutum HOM05D004612 ORTHO05D004940 4.5e-26 122.9 178 46.6
CARHR288840 Cardamine hirsuta HOM05D004612 ORTHO05D004940 4.9e-25 119.4 270 34.4
Gohir.D02G101800 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.6e-23 114.4 80 77.5
AagrBONN_evm.TU.Sc2ySwM_344.1798 Anthoceros agrestis HOM05D004612 ORTHO05D004940 1.8e-22 110.9 267 33.7
Gohir.D11G259000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 3.0e-22 110.2 80 75.0
Gorai.005G115400 Gossypium raimondii HOM05D004612 ORTHO05D004940 8.7e-22 108.6 80 75.0
BcaNung07163 Brassica carinata HOM05D004612 ORTHO05D004940 3.3e-21 106.7 180 38.9
Gorai.007G277100 Gossypium raimondii HOM05D004612 ORTHO05D004940 7.4e-21 105.5 80 73.8
Gorai.005G189400 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.6e-20 104.4 82 72.0
CSS0037024 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.8e-20 103.6 264 32.2
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 2.8e-20 103.6 146 45.2
Gorai.005G166700 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.1e-19 101.7 180 40.6
Pp3c10_3850 Physcomitrium patens HOM05D004612 ORTHO05D004940 1.7e-17 94.4 200 36.0
Mapoly0068s0044 Marchantia polymorpha HOM05D004612 ORTHO05D004940 5.5e-16 89.4 267 30.7
SMO364G0809 Selaginella moellendorffii HOM05D004612 ORTHO05D004940 7.1e-16 89.0 178 34.8
Gohir.D02G169000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 3.5e-15 86.7 60 75.0
BraA09t39921Z Brassica rapa HOM05D000302 ORTHO05D001604 1.4e-08 64.7 53 62.3
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 4.2e-08 63.2 64 53.1
CBR_g30725 Chara braunii HOM05D004612 ORTHO05D004940 1.6e-07 61.2 226 27.9
CDE05G2136 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 6.1e-07 59.3 72 48.6
CSS0005777 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 8.7e-06 55.5 49 55.1


User provided reference genes

Program Settings