Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 4.9e-224 780.8 389 100.0
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.5e-193 679.5 390 86.9
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 5.7e-188 661.0 387 84.8
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 2.6e-180 635.6 390 82.6
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 8.5e-176 620.5 390 79.7
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.4e-175 619.8 390 78.5
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 8.0e-174 614.0 390 79.0
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.0e-173 612.1 391 78.3
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 3.3e-172 608.6 391 78.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 5.7e-172 607.8 391 75.7
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 9.4e-167 590.5 390 75.4
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.7e-166 588.2 391 74.4
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.0e-165 587.0 391 74.9
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.8e-165 586.3 391 75.7
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 6.8e-165 584.3 391 73.9
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.1e-162 577.0 408 72.5
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 3.1e-162 575.5 385 75.1
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 9.1e-162 573.9 389 72.5
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 3.5e-161 572.0 408 70.8
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 5.0e-160 568.2 391 72.1
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 6.5e-160 567.8 390 73.1
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 1.9e-159 566.2 408 70.8
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.9e-159 566.2 391 73.1
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.5e-159 565.8 391 72.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 3.2e-159 565.5 391 72.4
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.6e-158 563.1 390 72.1
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.6e-158 562.0 391 72.4
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 3.6e-158 562.0 388 72.2
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 6.1e-158 561.2 389 71.2
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-157 560.1 393 72.3
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.0e-157 558.9 389 73.3
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 5.2e-157 558.1 388 72.9
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 6.8e-157 557.8 389 73.0
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 8.8e-157 557.4 408 69.9
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.5e-156 556.6 390 73.3
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.4e-156 555.4 389 70.4
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 4.4e-156 555.1 389 70.4
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.7e-156 554.7 393 71.8
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.2e-155 552.7 393 71.5
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.8e-155 551.6 391 71.4
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.4e-154 549.3 393 71.0
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 7.0e-154 547.7 391 71.9
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.1e-154 547.4 415 68.0
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 9.1e-154 547.4 387 72.9
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.2e-153 547.0 390 70.8
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.6e-153 546.6 415 68.4
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 2.7e-153 545.8 376 72.9
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 4.5e-153 545.0 365 78.1
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.0e-152 543.9 390 71.0
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.7e-152 543.1 405 68.6
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 2.9e-152 542.3 381 73.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 8.6e-152 540.8 391 70.1
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 2.5e-151 539.3 374 73.3
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.5e-151 539.3 389 70.4
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 7.2e-151 537.7 382 75.1
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 9.5e-151 537.3 389 70.2
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 9.5e-151 537.3 396 71.7
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.1e-150 536.2 398 70.4
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 6.1e-150 534.6 391 70.6
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 5.2e-149 531.6 400 68.2
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 5.2e-149 531.6 424 67.9
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 5.2e-149 531.6 388 70.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 6.8e-149 531.2 392 68.9
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.5e-148 530.0 391 69.1
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 5.7e-148 528.1 390 70.0
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 7.5e-148 527.7 389 70.7
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.5e-148 527.7 393 69.7
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 7.5e-148 527.7 390 69.5
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 9.8e-148 527.3 392 70.2
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.2e-147 526.2 393 70.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 3.7e-147 525.4 391 68.8
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.2e-145 520.4 393 67.7
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 4.5e-145 518.5 356 74.4
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.9e-144 515.8 392 67.3
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.9e-143 513.1 392 67.3
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 3.3e-143 512.3 368 69.8
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 9.5e-143 510.8 377 69.8
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 2.1e-142 509.6 391 67.0
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.8e-141 506.5 392 67.1
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 9.8e-140 500.7 392 66.6
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 4.9e-139 498.4 391 64.7
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.9e-138 496.5 391 64.2
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 5.4e-138 495.0 367 69.2
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 9.2e-138 494.2 391 64.2
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 9.2e-138 494.2 389 65.3
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 9.2e-138 494.2 389 65.6
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 6.0e-137 491.5 392 63.8
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.3e-136 490.3 391 64.5
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.3e-136 490.3 391 64.5
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 5.0e-136 488.4 366 67.8
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 4.7e-134 481.9 377 67.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.3e-133 479.6 350 70.3
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 6.4e-131 471.5 417 60.4
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.6e-126 456.8 323 70.6
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 3.1e-125 452.6 335 67.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 2.4e-114 416.4 342 61.1
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 2.4e-114 416.4 378 59.0
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.2e-114 415.6 264 76.5
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.5e-108 397.1 252 76.2
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.6e-100 369.8 316 60.4
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.9e-99 366.3 389 52.7
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 6.0e-97 358.6 265 69.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.9e-88 329.3 202 78.7
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.1e-88 328.9 324 55.6
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 6.9e-85 318.5 189 79.9
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.3e-83 314.3 265 60.8
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.5e-81 306.2 217 73.7
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 9.7e-79 298.1 226 66.8
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 3.4e-76 289.7 164 84.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.4e-69 267.7 279 47.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 8.8e-64 248.4 188 62.8
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.1e-63 248.1 178 67.4
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.3e-59 234.6 131 84.7
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 9.1e-53 211.8 216 48.1
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 5.5e-50 202.6 212 47.6
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.8e-48 197.6 114 81.6
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.3e-46 191.4 188 55.9
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 3.7e-46 189.9 124 76.6
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 4.4e-39 166.4 131 64.9
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 9.8e-39 165.2 133 60.9
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.8e-38 163.7 211 47.4
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 1.1e-37 161.8 133 60.2
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 5.9e-36 156.0 200 45.5
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 8.6e-35 152.1 235 40.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 4.6e-28 129.8 84 73.8
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 7.8e-28 129.0 181 44.2
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 3.0e-27 127.1 72 86.1
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-26 125.2 189 44.4
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.1e-25 120.9 75 72.0
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.6e-25 120.2 63 90.5
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.3e-22 111.7 113 55.8
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 7.0e-21 105.9 109 51.4
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 2.9e-14 84.0 93 54.8
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 7.8e-12 75.9 70 57.1
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 1.0e-11 75.5 46 82.6
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 5.6e-10 69.7 46 76.1
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.7e-09 66.6 105 39.0


User provided reference genes

Program Settings