Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 0.0e+00 1090.9 555 100.0
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.9e-278 961.4 542 89.7
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.2e-253 878.2 543 81.4
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.7e-242 840.9 543 79.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.7e-242 840.9 543 79.2
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.4e-235 819.7 542 75.6
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.5e-229 799.7 540 75.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 3.4e-226 788.5 542 73.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.2e-225 785.8 543 72.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.7e-225 785.0 543 72.6
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.4e-224 782.3 548 73.2
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 6.1e-220 767.7 547 71.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.8e-219 766.1 547 71.1
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.5e-213 746.5 542 70.8
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.9e-213 746.1 545 70.6
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.3e-213 745.3 544 71.1
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.4e-211 740.0 542 68.6
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 6.8e-211 737.6 542 69.9
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.2e-210 736.9 545 71.7
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.0e-210 736.1 542 70.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.3e-209 733.4 540 69.8
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.3e-209 733.4 542 70.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.2e-209 732.6 541 69.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.9e-209 732.3 547 69.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.4e-209 731.1 547 70.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 6.4e-209 731.1 542 69.6
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.7e-207 725.7 537 68.7
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 7.8e-207 724.2 542 67.5
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 7.8e-207 724.2 540 68.1
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.7e-206 723.0 546 67.8
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.3e-206 722.6 540 67.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 8.6e-206 720.7 543 68.0
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.3e-205 718.8 557 66.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.3e-205 718.4 542 69.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 9.5e-205 717.2 543 67.0
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 4.7e-204 714.9 585 63.8
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 4.7e-204 714.9 586 64.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.4e-203 713.4 544 66.2
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.3e-203 712.6 545 66.1
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.0e-203 711.8 528 68.4
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 5.2e-203 711.4 533 67.7
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.9e-203 710.7 586 63.8
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.2e-202 710.3 546 66.5
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 2.6e-202 709.1 542 66.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 7.5e-202 707.6 529 68.4
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 9.9e-202 707.2 543 67.6
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 9.9e-202 707.2 543 66.1
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 2.2e-201 706.1 545 66.8
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.7e-201 705.3 542 66.4
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 8.3e-201 704.1 542 67.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.1e-200 703.7 545 65.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.4e-200 703.4 544 68.0
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.4e-200 703.4 540 66.1
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 5.4e-200 701.4 546 65.6
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 5.4e-200 701.4 540 65.9
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 5.4e-200 701.4 540 66.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 5.4e-200 701.4 543 65.9
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.6e-199 699.9 526 68.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.0e-198 697.2 540 65.2
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.3e-198 696.8 543 66.9
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.3e-197 691.8 544 65.8
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.6e-196 689.9 544 64.9
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.1e-191 672.9 537 64.6
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.3e-190 669.5 585 60.7
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.5e-189 666.8 545 62.4
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-189 666.4 548 63.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-189 666.0 585 60.3
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-189 666.0 585 60.3
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 5.6e-189 664.8 548 63.1
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.3e-189 664.5 514 66.1
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.8e-188 662.5 544 62.5
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.7e-188 661.8 585 60.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.2e-188 661.4 585 60.0
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.4e-187 659.4 541 62.3
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 5.8e-186 654.8 544 60.1
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 6.4e-185 651.4 531 63.3
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.4e-184 649.4 544 60.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.2e-184 648.7 546 62.8
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 5.4e-184 648.3 544 60.5
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 9.3e-184 647.5 545 60.9
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-183 647.1 547 60.3
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.1e-183 646.4 542 63.1
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-182 644.0 586 58.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 6.6e-182 641.3 545 60.4
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 4.3e-181 638.6 545 60.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 7.3e-181 637.9 545 60.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.6e-180 636.7 533 61.9
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.1e-180 636.3 542 60.5
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.8e-180 636.0 544 60.7
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.1e-179 632.5 577 59.6
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 5.3e-179 631.7 415 76.6
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.6e-178 629.4 546 59.7
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.2e-176 622.5 554 60.3
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 9.3e-176 620.9 545 58.9
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.3e-169 600.5 540 58.3
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.7e-169 600.1 540 57.0
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.2e-168 595.5 536 59.0
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 7.1e-168 594.7 545 56.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.3e-158 563.1 554 54.5
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.1e-158 562.0 554 55.1
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 7.4e-149 531.6 427 63.9
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 6.3e-148 528.5 421 64.4
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 5.7e-141 505.4 413 61.5
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.1e-135 486.9 508 53.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.4e-134 484.2 562 49.8
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 5.9e-130 468.8 541 50.6
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 3.7e-124 449.5 603 41.8
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 7.0e-123 445.3 358 61.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 3.5e-122 443.0 495 51.1
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 8.0e-119 431.8 319 68.7
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 8.3e-116 421.8 468 51.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.5e-112 410.2 427 53.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.3e-105 387.9 317 64.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 2.9e-105 386.7 359 56.5
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.0e-102 378.3 515 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 3.0e-97 360.1 502 41.0
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 8.9e-94 348.6 424 47.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.4e-91 340.5 523 39.4
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 4.1e-91 339.7 347 54.5
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 3.6e-87 326.6 487 38.6
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 4.7e-87 326.2 502 42.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.7e-87 326.2 270 60.4
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.4e-86 324.7 502 42.6
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 5.1e-73 279.6 274 55.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 5.6e-64 249.6 185 66.5
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.6e-64 249.6 215 62.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 4.8e-63 246.5 211 62.6
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 3.8e-44 183.7 110 84.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 5.1e-41 173.3 123 69.9
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.8e-39 167.5 167 58.7
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 3.1e-38 164.1 198 50.0
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 3.1e-38 164.1 586 25.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-33 148.7 105 71.4
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.3e-33 147.9 113 67.3
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 4.1e-30 137.1 536 26.5
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.6e-29 134.4 452 29.0
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 5.9e-29 133.3 115 60.0
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.3e-28 132.1 97 69.1
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-28 131.7 104 64.4
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.2e-28 131.3 88 75.0
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 2.5e-27 127.9 88 70.5
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 9.4e-27 125.9 499 26.7
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.4e-22 112.1 89 67.4
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.8e-15 87.8 114 43.9
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.2e-13 82.4 120 43.3
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.5e-13 80.5 99 39.4
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 7.2e-11 73.2 85 51.8
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 5.2e-09 67.0 487 23.4
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.3e-07 60.1 126 34.9
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 9.1e-06 56.2 100 35.0


User provided reference genes

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