Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13258 Vaccinium macrocarpon HOM05D002625 ORTHO05D036570 6.7e-159 563.9 274 100.0
CSS0008846 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 4.6e-27 125.9 122 56.6
QL04p054192 Quercus lobata HOM05D002625 ORTHO05D036570 1.2e-19 101.3 98 55.1
Ca_10938_v3 Cicer arietinum L. HOM05D002625 ORTHO05D002977 5.7e-17 92.4 131 42.7
Peaxi162Scf00020g01026 Petunia axillaris HOM05D002625 ORTHO05D002977 1.0e-13 81.6 114 43.0
CSS0003657 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 1.7e-13 80.9 51 74.5
CSS0048071 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 1.7e-13 80.9 51 74.5
MBI11_g32499_MAGBIO Magnolia biondii HOM05D002625 ORTHO05D036570 2.2e-13 80.5 119 42.0
Rhsim07G0012900 Rhododendron simsii HOM05D002625 ORTHO05D002977 2.9e-13 80.1 96 51.0
Actinidia10045 Actinidia chinensis HOM05D002625 ORTHO05D002977 2.1e-11 73.9 51 68.6
SHI07110 Sapria himalayana HOM05D002625 ORTHO05D002977 2.1e-11 73.9 121 38.8
CSS0039015 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 6.1e-11 72.4 62 61.3
Actinidia20886 Actinidia chinensis HOM05D002625 ORTHO05D002977 1.0e-10 71.6 51 66.7
Dinv38919 Davidia involucrata HOM05D002625 ORTHO05D002977 1.8e-10 70.9 51 66.7
vmacro23483 Vaccinium macrocarpon HOM05D002625 ORTHO05D002977 2.3e-10 70.5 42 81.0
Hma1.2p1_1123F.1_g259390 Hydrangea macrophylla HOM05D002625 ORTHO05D002977 3.0e-10 70.1 51 66.7
Duzib068G1381 Durio zibethinus HOM05D002625 ORTHO05D002977 5.1e-10 69.3 51 64.7
Dinv37617 Davidia involucrata HOM05D002625 ORTHO05D002977 6.7e-10 68.9 51 64.7
Manes.01G059200 Manihot esculenta HOM05D002625 ORTHO05D002977 6.7e-10 68.9 51 64.7
CiPaw.11G132400 Carya illinoinensis HOM05D002625 ORTHO05D002977 1.1e-09 68.2 51 62.7
CiPaw.12G090800 Carya illinoinensis HOM05D002625 ORTHO05D002977 1.1e-09 68.2 51 64.7
Sopen12g028720 Solanum pennellii HOM05D002625 ORTHO05D002977 1.1e-09 68.2 51 64.7
Lsat_1_v5_gn_6_85341 Lactuca sativa HOM05D002625 ORTHO05D002977 2.0e-09 67.4 36 77.8
Lalb_Chr05g0211771 Lupinus albus HOM05D002625 ORTHO05D002977 2.0e-09 67.4 69 50.7
Peaxi162Scf00117g01731 Petunia axillaris HOM05D002625 ORTHO05D002977 2.6e-09 67.0 51 62.7
PGR031G0747 Punica granatum HOM05D002625 ORTHO05D002977 2.6e-09 67.0 51 64.7
PGSC0003DMG400004981 Solanum tuberosum HOM05D002625 ORTHO05D002977 2.6e-09 67.0 51 64.7
CAN.G1265.1 Capsicum annuum HOM05D002625 ORTHO05D002977 3.3e-09 66.6 51 64.7
Cc08_g15030 Coffea canephora HOM05D002625 ORTHO05D002977 3.3e-09 66.6 51 60.8
Nitab4.5_0003043g0020 Nicotiana tabacum HOM05D002625 ORTHO05D002977 3.3e-09 66.6 51 62.7
Nitab4.5_0007313g0020 Nicotiana tabacum HOM05D002625 ORTHO05D002977 3.3e-09 66.6 51 62.7
TAR335G0003 Trochodendron aralioides HOM05D002625 ORTHO05D002977 3.3e-09 66.6 51 64.7
DCAR_004620 Daucus carota HOM05D002625 ORTHO05D002977 4.4e-09 66.2 51 58.8
Lj4g0007440 Lotus japonicus HOM05D002625 ORTHO05D002977 4.4e-09 66.2 51 60.8
CsaV3_4G005830 Cucumis sativus L. HOM05D002625 ORTHO05D002977 5.7e-09 65.9 50 62.0
Gorai.004G139700 Gossypium raimondii HOM05D002625 ORTHO05D002977 5.7e-09 65.9 51 60.8
Lj2A181G46 Lonicera japonica HOM05D002625 ORTHO05D002977 5.7e-09 65.9 49 63.3
MSTRG.11968 Avicennia marina HOM05D002625 ORTHO05D002977 7.4e-09 65.5 51 62.7
Eucgr.D01828 Eucalyptus grandis HOM05D002625 ORTHO05D002977 7.4e-09 65.5 51 60.8
MELO3C016368.2 Cucumis melo HOM05D002625 ORTHO05D002977 9.7e-09 65.1 50 62.0
Duzib084G1145 Durio zibethinus HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 58.8
Duzib205G1176 Durio zibethinus HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 60.8
Lsat_1_v5_gn_6_5060 Lactuca sativa HOM05D002625 ORTHO05D002977 9.7e-09 65.1 36 77.8
MD14G1109300 Malus domestica HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 58.8
Nn6g33332 Nelumbo nucifera HOM05D002625 ORTHO05D002977 9.7e-09 65.1 49 65.3
Potri.003G130700 Populus trichocarpa HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 62.7
SGA_v2.0_scaffold96G28923 Striga asiatica HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 62.7
vmacro11391 Vaccinium macrocarpon HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 58.8
VMungo0251G0855 Vigna mungo HOM05D002625 ORTHO05D002977 9.7e-09 65.1 51 58.8
CSS0023146 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 1.3e-08 64.7 51 58.8
ECA233G6057 Erigeron canadensis HOM05D002625 ORTHO05D002977 1.3e-08 64.7 36 75.0
Gohir.A08G115700 Gossypium hirsutum HOM05D002625 ORTHO05D002977 1.3e-08 64.7 51 58.8
Gohir.D08G136500 Gossypium hirsutum HOM05D002625 ORTHO05D002977 1.3e-08 64.7 51 58.8
Manes.02G019200 Manihot esculenta HOM05D002625 ORTHO05D002977 1.3e-08 64.7 38 71.1
Oeu000833.2 Olea europaea HOM05D002625 ORTHO05D002977 1.3e-08 64.7 51 60.8
Potri.001G101100 Populus trichocarpa HOM05D002625 ORTHO05D002977 1.3e-08 64.7 51 62.7
Gohir.D12G232200 Gossypium hirsutum HOM05D002625 ORTHO05D002977 1.7e-08 64.3 51 62.7
Gorai.008G248500 Gossypium raimondii HOM05D002625 ORTHO05D002977 1.7e-08 64.3 51 62.7
HanXRQChr03g0085931 Helianthus annuus HOM05D002625 ORTHO05D002977 1.7e-08 64.3 38 68.4
RcHm_v2.0_Chr1g0356841 Rosa chinensis HOM05D002625 ORTHO05D002977 1.7e-08 64.3 45 66.7
Sabra01G0076100 Salix brachista HOM05D002625 ORTHO05D002977 1.7e-08 64.3 38 71.1
Hund11450 Selenicereus undatus HOM05D002625 ORTHO05D002977 1.7e-08 64.3 51 58.8
TWI60G0865 Tripterygium wilfordii HOM05D002625 ORTHO05D002977 1.7e-08 64.3 51 60.8
Glyma.01G221200 Glycine max HOM05D002625 ORTHO05D002977 2.2e-08 63.9 51 56.9
Prupe.5G104200 Prunus persica HOM05D002625 ORTHO05D002977 2.2e-08 63.9 51 58.8
ECA240G4481 Erigeron canadensis HOM05D002625 ORTHO05D002977 2.8e-08 63.5 49 63.3
FvH4_5g02860 Fragaria vesca HOM05D002625 ORTHO05D002977 2.8e-08 63.5 49 59.2
FAN08G1618 Fragaria x ananassa HOM05D002625 ORTHO05D002977 2.8e-08 63.5 49 59.2
FAN13G0497 Fragaria x ananassa HOM05D002625 ORTHO05D002977 2.8e-08 63.5 49 59.2
Sabra03G0092900 Salix brachista HOM05D002625 ORTHO05D002977 2.8e-08 63.5 51 60.8
Glyma.11G022500 Glycine max HOM05D002625 ORTHO05D002977 3.7e-08 63.2 51 56.9
Migut.A00748 Erythranthe guttata HOM05D002625 ORTHO05D002977 4.8e-08 62.8 51 58.8
Gohir.A12G231100 Gossypium hirsutum HOM05D002625 ORTHO05D002977 4.8e-08 62.8 51 60.8
RcHm_v2.0_Chr7g0197041 Rosa chinensis HOM05D002625 ORTHO05D002977 4.8e-08 62.8 49 59.2
Sc22g0005430 Simmondsia chinensis HOM05D002625 ORTHO05D002977 4.8e-08 62.8 51 58.8
TPR.G12898 Trifolium pratense HOM05D002625 ORTHO05D002977 4.8e-08 62.8 51 58.8
unitig_88.g27621 Utricularia gibba HOM05D002625 ORTHO05D002977 4.8e-08 62.8 51 58.8
ATR0661G245 Amborella trichopoda HOM05D002625 ORTHO05D002977 6.3e-08 62.4 49 63.3
arahy.Tifrunner.gnm1.ann1.F051D6 Arachis hypogaea HOM05D002625 ORTHO05D002977 6.3e-08 62.4 51 60.8
arahy.Tifrunner.gnm1.ann1.QMK3CD Arachis hypogaea HOM05D002625 ORTHO05D002977 6.3e-08 62.4 51 60.8
FAN10G0842 Fragaria x ananassa HOM05D002625 ORTHO05D002977 6.3e-08 62.4 45 62.2
FAN10G3497 Fragaria x ananassa HOM05D002625 ORTHO05D002977 6.3e-08 62.4 45 62.2
MD06G1088200 Malus domestica HOM05D002625 ORTHO05D002977 6.3e-08 62.4 51 54.9
Rhsim02G0234200 Rhododendron simsii HOM05D002625 ORTHO05D002977 6.3e-08 62.4 51 56.9
GSVIVG01019394001 Vitis vinifera HOM05D002625 ORTHO05D002977 6.3e-08 62.4 51 60.8
Thecc.03G283000 Theobroma cacao HOM05D002625 ORTHO05D002977 8.2e-08 62.0 51 56.9
TWI81G0702 Tripterygium wilfordii HOM05D002625 ORTHO05D002977 8.2e-08 62.0 51 58.8
HPP92_022213 Vanilla planifolia HOM05D002625 ORTHO05D002977 8.2e-08 62.0 51 60.8
HPP92_022225 Vanilla planifolia HOM05D002625 ORTHO05D002977 8.2e-08 62.0 51 60.8
Nitab4.5_0009853g0040 Nicotiana tabacum HOM05D002625 ORTHO05D002977 1.1e-07 61.6 80 42.5
Ciclev10021784m.g Citrus clementina HOM05D002625 ORTHO05D002977 1.4e-07 61.2 38 68.4
HanXRQChr13g0393771 Helianthus annuus HOM05D002625 ORTHO05D002977 1.4e-07 61.2 36 66.7
Aa31LG9G560 Aethionema arabicum HOM05D002625 ORTHO05D002977 1.8e-07 60.8 39 61.5
ClCG07G008270 Citrullus lanatus HOM05D002625 ORTHO05D002977 1.8e-07 60.8 50 58.0
FvH4_7g14890 Fragaria vesca HOM05D002625 ORTHO05D002977 1.8e-07 60.8 45 60.0
FAN06G5085 Fragaria x ananassa HOM05D002625 ORTHO05D002977 1.8e-07 60.8 45 60.0
Sed0014104 Sechium edule HOM05D002625 ORTHO05D002977 1.8e-07 60.8 50 58.0
PSO478G3713 Papaver somniferum HOM05D002625 ORTHO05D002977 2.4e-07 60.5 48 62.5
PSO782G5556 Papaver somniferum HOM05D002625 ORTHO05D002977 2.4e-07 60.5 48 62.5
Sed0016448 Sechium edule HOM05D002625 ORTHO05D002977 2.4e-07 60.5 51 54.9
AUR62010716 Chenopodium quinoa HOM05D002625 ORTHO05D002977 3.1e-07 60.1 38 65.8
Psat1g132600 Pisum sativum HOM05D002625 ORTHO05D002977 3.1e-07 60.1 49 57.1
Aqoxy7G00255 Aquilegia oxysepala HOM05D002625 ORTHO05D002977 4.1e-07 59.7 48 60.4
AT1G63830 Arabidopsis thaliana HOM05D002625 ORTHO05D002977 4.1e-07 59.7 38 65.8
CsaV3_6G000790 Cucumis sativus L. HOM05D002625 ORTHO05D002977 4.1e-07 59.7 52 55.8
Phvul.002G291700 Phaseolus vulgaris HOM05D002625 ORTHO05D002977 4.1e-07 59.7 51 54.9
Sp2g00860 Schrenkiella parvula HOM05D002625 ORTHO05D002977 4.1e-07 59.7 38 65.8
HPP92_007336 Vanilla planifolia HOM05D002625 ORTHO05D002977 4.1e-07 59.7 51 56.9
VMungo1215G0754 Vigna mungo HOM05D002625 ORTHO05D002977 4.1e-07 59.7 41 58.5
FAN03G0271 Fragaria x ananassa HOM05D002625 ORTHO05D002977 5.3e-07 59.3 45 57.8
Medtr8g098735 Medicago truncatula HOM05D002625 ORTHO05D002977 5.3e-07 59.3 51 54.9
EL10Ac5g12805 Beta vulgaris HOM05D002625 ORTHO05D002977 6.9e-07 58.9 38 63.2
C06p19810 Brassica napus HOM05D002625 ORTHO05D002977 6.9e-07 58.9 123 36.6
BcaB06g27618 Brassica carinata HOM05D002625 ORTHO05D002977 9.1e-07 58.5 67 47.8
Phvul.002G158600 Phaseolus vulgaris HOM05D002625 ORTHO05D002977 9.1e-07 58.5 51 51.0
AL2G11310 Arabidopsis lyrata HOM05D002625 ORTHO05D002977 1.2e-06 58.2 38 63.2
Glyma.08G016600 Glycine max HOM05D002625 ORTHO05D002977 1.2e-06 58.2 51 54.9
Cpa.g.sc180.15 Carica papaya HOM05D002625 ORTHO05D002977 1.5e-06 57.8 38 60.5
Os03g0123600 Oryza sativa ssp. japonica HOM05D002625 ORTHO05D002977 1.5e-06 57.8 49 59.2
BcaC02g08960 Brassica carinata HOM05D002625 ORTHO05D002977 2.0e-06 57.4 36 66.7
A04p14520 Brassica napus HOM05D002625 ORTHO05D002977 2.0e-06 57.4 67 46.3
C04p48440 Brassica napus HOM05D002625 ORTHO05D002977 2.0e-06 57.4 67 46.3
Carub.0007s3409 Capsella rubella HOM05D002625 ORTHO05D002977 2.0e-06 57.4 67 47.8
MELO3C021191.2 Cucumis melo HOM05D002625 ORTHO05D002977 2.0e-06 57.4 39 61.5
Thhalv10023674m.g Eutrema salsugineum HOM05D002625 ORTHO05D002977 2.0e-06 57.4 38 60.5
HanXRQChr17g0533441 Helianthus annuus HOM05D002625 ORTHO05D002977 2.0e-06 57.4 32 71.9
SEGI_02364 Sequoiadendron giganteum HOM05D002625 ORTHO05D002977 2.0e-06 57.4 51 51.0
MSTRG.25624 Avicennia marina HOM05D002625 ORTHO05D002977 2.6e-06 57.0 51 56.9
Lalb_Chr05g0224611 Lupinus albus HOM05D002625 ORTHO05D002977 2.6e-06 57.0 48 54.2
THA.LOC104809374 Tarenaya hassleriana HOM05D002625 ORTHO05D002977 2.6e-06 57.0 67 43.3
BcaB02g07894 Brassica carinata HOM05D002625 ORTHO05D002977 3.4e-06 56.6 67 46.3
Glyma.05G209900 Glycine max HOM05D002625 ORTHO05D002977 4.5e-06 56.2 51 52.9
Nitab4.5_0014843g0030 Nicotiana tabacum HOM05D002625 ORTHO05D002977 4.5e-06 56.2 84 39.3
Sc01g0003580 Simmondsia chinensis HOM05D002625 ORTHO05D002977 4.5e-06 56.2 45 55.6
Solyc01g094870.3 Solanum lycopersicum HOM05D002625 ORTHO05D002977 4.5e-06 56.2 51 51.0
AT5G41390 Arabidopsis thaliana HOM05D002625 ORTHO05D002977 5.9e-06 55.8 67 46.3
CARHR047370 Cardamine hirsuta HOM05D002625 ORTHO05D002977 5.9e-06 55.8 38 57.9
Prupe.2G173900 Prunus persica HOM05D002625 ORTHO05D002977 7.7e-06 55.5 38 57.9
Prupe.2G174000 Prunus persica HOM05D002625 ORTHO05D002977 7.7e-06 55.5 36 63.9
GSVIVG01026997001 Vitis vinifera HOM05D002625 ORTHO05D002977 7.7e-06 55.5 51 49.0


User provided reference genes

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