Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.2e-132 476.5 233 100.0
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.5e-124 448.4 233 94.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 7.7e-124 447.2 233 94.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 7.0e-117 424.1 233 89.3
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.3e-107 392.5 255 77.3
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.5e-106 389.0 233 81.1
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 9.5e-106 387.1 233 81.1
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.6e-105 386.3 233 81.5
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 5.2e-104 381.3 233 78.1
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 5.7e-103 377.9 233 79.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.2e-102 375.9 233 76.8
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.7e-102 375.2 235 78.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.4e-101 373.2 233 78.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.7e-100 369.0 224 79.0
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.7e-100 369.0 224 79.0
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 5.9e-100 367.9 226 79.2
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.5e-98 363.2 225 76.4
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.3e-98 362.1 235 77.4
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.3e-98 362.1 235 77.4
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.3e-98 361.7 226 76.1
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 4.3e-98 361.7 226 77.4
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.3e-98 361.7 233 75.1
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 5.6e-98 361.3 233 75.5
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 7.3e-98 360.9 233 76.0
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 9.5e-98 360.5 237 74.3
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 9.5e-98 360.5 234 74.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.8e-97 359.0 224 78.1
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.8e-97 359.0 233 76.0
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 2.8e-97 359.0 234 74.4
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.8e-97 359.0 224 77.2
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.6e-97 358.6 249 71.9
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.7e-97 358.2 233 75.5
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 6.2e-97 357.8 233 75.5
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.2e-97 357.8 224 77.2
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.2e-97 357.8 224 77.2
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 6.2e-97 357.8 233 74.2
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 8.0e-97 357.5 225 75.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 8.0e-97 357.5 232 75.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.4e-96 356.7 233 74.2
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-96 356.7 234 73.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.8e-96 356.3 226 76.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.8e-96 356.3 226 76.1
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.0e-96 355.1 233 75.5
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 8.9e-96 354.0 233 73.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.9e-96 354.0 233 73.8
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.6e-95 352.4 233 73.8
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.6e-95 352.4 233 73.0
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.6e-95 352.4 226 76.1
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 3.4e-95 352.1 234 73.1
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.4e-95 352.1 233 75.5
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.4e-95 352.1 233 75.1
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 5.8e-95 351.3 233 74.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 9.8e-95 350.5 230 73.0
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.3e-94 350.1 236 73.3
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.3e-94 350.1 239 71.5
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.3e-94 350.1 233 74.7
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.2e-94 349.4 219 76.3
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 2.2e-94 349.4 234 73.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.2e-94 349.4 234 72.2
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.9e-94 349.0 233 75.1
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 3.7e-94 348.6 234 73.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.7e-94 348.6 226 75.7
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 4.9e-94 348.2 233 74.2
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 4.9e-94 348.2 236 74.6
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 4.9e-94 348.2 236 74.6
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 6.4e-94 347.8 224 75.0
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 6.4e-94 347.8 234 74.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.3e-94 347.4 226 75.2
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-93 347.1 220 77.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.4e-93 346.7 219 75.3
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 3.2e-93 345.5 218 77.1
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 3.5e-92 342.0 233 72.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.5e-92 342.0 249 69.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.8e-92 340.9 249 68.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.3e-91 340.1 234 71.8
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.3e-91 340.1 233 72.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-91 339.3 236 72.0
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 3.9e-91 338.6 213 76.1
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.9e-91 338.6 226 72.6
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 8.6e-91 337.4 214 75.2
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 3.3e-90 335.5 219 74.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.3e-90 335.1 234 70.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 4.3e-90 335.1 231 70.6
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 5.6e-90 334.7 236 72.9
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.2e-89 333.6 235 70.6
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 4.7e-89 331.6 234 70.5
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.3e-88 329.3 235 66.8
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.3e-88 329.3 214 72.0
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.3e-88 329.3 210 75.2
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 4.0e-88 328.6 242 68.6
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 8.9e-88 327.4 235 68.1
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.0e-87 326.2 226 71.7
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.6e-87 325.9 219 70.3
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 4.4e-87 325.1 234 67.1
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.4e-87 325.1 233 70.8
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 5.8e-87 324.7 236 66.9
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.8e-87 324.7 227 67.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 7.5e-87 324.3 231 67.5
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 7.5e-87 324.3 234 67.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 9.8e-87 323.9 235 67.2
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.8e-87 323.9 234 66.2
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.3e-86 323.6 222 69.4
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.2e-86 322.8 234 66.7
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.9e-86 322.4 219 69.4
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.9e-86 322.4 235 69.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.7e-86 322.0 236 66.5
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.7e-86 322.0 233 69.5
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.7e-86 322.0 281 60.5
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 8.3e-86 320.9 219 68.9
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 8.3e-86 320.9 206 73.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.4e-85 320.1 224 69.2
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 5.4e-85 318.2 236 65.7
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 5.4e-85 318.2 236 65.7
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 5.4e-85 318.2 233 68.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.2e-84 317.0 237 66.7
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.6e-84 316.6 236 65.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 3.5e-84 315.5 238 67.6
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 4.6e-84 315.1 216 69.0
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.1e-82 310.5 185 80.5
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.5e-82 309.3 227 65.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.5e-82 309.3 226 69.0
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.6e-81 306.6 248 63.7
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.8e-78 295.4 236 66.9
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.2e-76 290.4 193 77.2
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.5e-76 288.9 180 77.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 5.1e-75 285.0 226 64.6
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.4e-72 276.9 233 62.2
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.4e-70 267.7 185 70.8
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.2e-69 265.8 212 61.8
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.9e-67 258.8 230 61.3
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.2e-65 251.5 162 74.7
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.1e-64 250.8 211 56.4
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.8e-64 250.0 157 75.2
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 9.0e-64 247.7 187 69.0
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.6e-63 246.1 161 75.2
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.7e-52 209.5 145 72.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.9e-51 205.7 186 57.5
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.5e-50 203.0 233 48.1
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 5.6e-50 201.8 221 47.5
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.8e-49 198.7 233 47.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 8.2e-49 198.0 211 47.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.9e-46 188.7 120 73.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.5e-45 186.4 183 54.6
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 2.1e-44 183.3 132 66.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.5e-37 159.8 199 43.2
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 7.9e-36 154.8 90 80.0
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 5.1e-35 152.1 99 70.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-34 151.0 158 52.5
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.3e-33 147.5 152 50.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 6.9e-32 141.7 92 76.1
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.7e-28 129.8 211 37.0
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 7.4e-26 121.7 105 61.9
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.4e-24 116.7 100 61.0
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.7e-22 110.5 67 80.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.9e-21 107.1 90 56.7
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.2e-20 104.4 194 32.0
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.5e-18 97.4 73 68.5
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.6e-18 96.7 76 68.4
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 9.7e-18 94.7 244 29.5
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.7e-18 94.7 76 67.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.2e-17 91.7 75 66.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.1e-16 91.3 55 78.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.8e-16 90.5 124 39.5
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.0e-14 84.7 52 78.8
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 4.2e-13 79.3 70 61.4
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-12 77.0 48 77.1
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.6e-12 76.3 40 80.0
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 3.0e-11 73.2 140 35.7
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.7e-09 66.2 53 66.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.0e-08 62.0 54 63.0
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.0e-07 60.5 42 64.3
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.0e-06 58.2 33 78.8


User provided reference genes

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