Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.4e-127 458.0 232 100.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.5e-119 433.0 232 95.7
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 6.5e-107 391.0 253 81.8
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.1e-101 373.6 234 82.9
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 9.1e-101 370.5 232 83.2
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 5.2e-96 354.8 234 77.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.3e-94 350.1 233 77.3
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.8e-93 346.3 233 76.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 4.1e-93 345.1 235 76.2
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 4.5e-92 341.7 224 79.0
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.9e-90 336.3 234 72.6
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.9e-90 336.3 257 69.6
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.3e-90 335.1 233 75.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.3e-90 335.1 225 76.4
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.6e-90 334.7 233 75.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 9.5e-90 334.0 216 77.3
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.5e-90 334.0 233 75.1
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.1e-89 332.8 234 74.4
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 4.7e-89 331.6 234 73.9
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.1e-89 331.3 216 75.9
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 8.0e-89 330.9 219 78.1
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 8.0e-89 330.9 236 76.3
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.0e-88 330.5 234 73.5
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.4e-88 330.1 224 75.0
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 5.2e-88 328.2 234 72.6
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.2e-88 328.2 235 74.9
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.2e-88 328.2 235 74.5
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 1.2e-87 327.0 217 76.0
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 2.0e-87 326.2 234 73.1
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 2.6e-87 325.9 223 75.3
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.4e-87 325.1 236 72.0
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.7e-87 324.7 234 71.4
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 5.7e-87 324.7 222 76.1
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 9.8e-87 323.9 234 71.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.3e-86 323.6 225 73.3
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.7e-86 323.2 227 72.2
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 3.7e-86 322.0 234 72.6
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.7e-86 322.0 228 74.1
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.9e-86 321.6 221 75.6
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 4.9e-86 321.6 228 73.7
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.9e-86 321.6 228 74.1
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 6.4e-86 321.2 235 73.6
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 6.4e-86 321.2 234 70.9
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 8.3e-86 320.9 263 67.7
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.8e-85 319.7 232 70.3
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 2.4e-85 319.3 235 69.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.4e-85 319.3 234 70.1
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.4e-85 319.3 212 76.4
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 3.2e-85 318.9 218 72.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.4e-85 318.2 228 72.4
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 9.2e-85 317.4 219 72.1
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.2e-84 317.0 220 75.0
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.2e-84 317.0 234 70.5
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.2e-84 317.0 225 71.1
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.0e-84 316.2 225 73.8
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.0e-84 316.2 234 70.9
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.7e-84 315.8 227 72.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 3.5e-84 315.5 235 68.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 5.9e-84 314.7 221 74.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-84 314.7 235 68.1
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.3e-83 313.5 234 69.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.3e-83 313.5 236 69.5
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.7e-83 313.2 292 62.0
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 2.3e-83 312.8 235 69.8
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.9e-83 312.0 226 71.7
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 6.6e-83 311.2 223 72.6
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 6.6e-83 311.2 230 69.6
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 6.6e-83 311.2 235 70.2
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 6.6e-83 311.2 234 70.1
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.1e-82 310.5 235 70.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.5e-82 310.1 235 70.2
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.9e-82 309.7 216 72.7
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.9e-82 309.7 232 70.7
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.9e-82 309.7 213 73.7
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.9e-82 309.7 216 71.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.5e-82 309.3 227 71.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.5e-82 309.3 234 69.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.5e-82 309.3 234 68.4
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.5e-82 309.3 221 73.8
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 3.3e-82 308.9 219 71.2
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-82 308.9 235 68.1
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.3e-82 308.9 234 68.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 5.6e-82 308.1 220 71.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.3e-82 307.8 227 71.8
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 9.5e-82 307.4 235 67.2
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 9.5e-82 307.4 236 69.9
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.2e-81 307.0 212 73.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-81 307.0 235 67.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.2e-81 307.0 234 68.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 2.1e-81 306.2 213 72.8
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.1e-81 306.2 218 73.4
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.8e-81 305.8 167 90.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.8e-81 305.8 214 72.0
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.6e-81 305.4 230 67.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 4.7e-81 305.1 234 67.5
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 4.7e-81 305.1 217 73.3
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 6.2e-81 304.7 223 71.3
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 8.0e-81 304.3 224 71.0
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 8.0e-81 304.3 231 70.6
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.1e-80 303.9 234 67.9
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.4e-80 303.5 224 69.2
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.4e-80 303.5 232 69.4
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.8e-80 303.1 209 74.6
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-80 302.8 230 67.8
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 2.3e-80 302.8 230 67.8
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-79 300.4 200 75.0
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.0e-79 299.7 226 68.1
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.1e-77 293.9 208 70.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.2e-77 292.4 235 69.4
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 5.4e-77 291.6 241 63.5
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 9.2e-77 290.8 207 71.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.2e-76 290.4 221 66.5
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.5e-74 283.5 225 63.1
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.6e-74 281.6 233 63.5
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.6e-73 278.9 317 51.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.8e-72 276.6 248 60.1
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.6e-71 272.7 234 63.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 7.5e-71 271.2 234 62.0
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 7.5e-71 271.2 220 61.4
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.9e-69 266.5 234 63.2
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 7.1e-69 264.6 233 66.1
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.6e-68 263.5 161 81.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 8.6e-67 257.7 170 77.6
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 4.3e-66 255.4 208 60.6
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 6.8e-64 248.1 215 61.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 8.9e-64 247.7 236 61.0
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.6e-63 246.1 216 63.0
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.4e-61 240.4 208 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 5.6e-58 228.4 219 53.9
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.8e-57 226.1 175 69.1
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 8.1e-57 224.6 173 60.1
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.4e-56 223.8 187 58.3
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.1e-56 222.6 125 86.4
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 5.2e-56 221.9 222 53.2
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.7e-54 216.9 117 88.0
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 3.8e-54 215.7 125 84.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 6.4e-54 214.9 164 68.9
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.4e-54 214.5 166 66.3
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 3.2e-53 212.6 145 75.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.6e-52 210.3 175 62.9
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 3.9e-51 205.7 252 44.8
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.6e-47 193.0 125 71.2
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.9e-46 189.5 157 65.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 5.4e-45 185.3 104 82.7
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 5.1e-43 178.7 206 48.5
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 9.6e-42 174.5 215 48.4
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.5e-39 165.6 302 38.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.7e-38 163.7 188 51.6
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.3e-35 153.3 176 52.3
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 5.6e-34 148.7 186 44.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.4e-31 139.4 81 82.7
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-30 137.5 118 65.3
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 3.3e-26 122.9 89 71.9
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.8e-25 119.8 75 80.0
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.7e-25 119.4 155 49.7
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-23 113.2 165 43.0
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.0e-22 111.3 62 79.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 2.2e-22 110.2 102 56.9
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 5.0e-22 109.0 110 53.6
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 7.2e-21 105.1 102 54.9
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.4e-19 100.9 67 74.6
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.0e-19 99.8 81 60.5
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.1e-18 97.8 174 35.1
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.5e-18 96.7 59 78.0
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.7e-17 92.8 243 32.5
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 6.9e-16 88.6 136 39.0
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.9e-16 88.6 170 38.2
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.2e-14 83.6 174 36.8
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.2e-12 77.8 78 52.6
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 2.0e-10 70.5 46 69.6
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.0e-10 70.5 92 46.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 3.1e-08 63.2 52 61.5
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 7.0e-08 62.0 44 61.4
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 4.5e-07 59.3 36 83.3
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.0e-06 58.2 34 67.6
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 5.0e-06 55.8 121 37.2


User provided reference genes

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