Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12850 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 1.3e-113 412.9 190 100.0
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 1.4e-11 73.9 49 61.2
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 4.2e-11 72.4 37 81.1
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 5.5e-11 72.0 37 78.4
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 2.1e-10 70.1 37 75.7
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 2.7e-10 69.7 37 73.0
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 6.1e-10 68.6 37 73.0
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 6.1e-10 68.6 37 73.0
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 6.1e-10 68.6 37 73.0
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 6.1e-10 68.6 37 73.0
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 6.1e-10 68.6 37 73.0
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 7.9e-10 68.2 63 50.8
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 1.0e-09 67.8 37 73.0
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 1.0e-09 67.8 37 73.0
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.8e-09 67.0 37 70.3
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 1.8e-09 67.0 37 73.0
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 2.3e-09 66.6 37 73.0
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 3.9e-09 65.9 37 70.3
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 3.9e-09 65.9 37 70.3
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 6.7e-09 65.1 37 70.3
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 6.7e-09 65.1 63 46.0
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 6.7e-09 65.1 37 67.6
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 1.1e-08 64.3 67 43.3
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 1.1e-08 64.3 37 67.6
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 1.1e-08 64.3 43 53.5
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 1.1e-08 64.3 37 67.6
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 1.5e-08 63.9 37 64.9
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 1.5e-08 63.9 37 67.6
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 1.5e-08 63.9 37 67.6
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 1.5e-08 63.9 37 67.6
Cpa.g.sc18.189 Carica papaya HOM05D004825 ORTHO05D005415 2.0e-08 63.5 37 67.6
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 2.0e-08 63.5 37 67.6
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 3.3e-08 62.8 37 64.9
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 3.3e-08 62.8 37 67.6
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 3.3e-08 62.8 67 44.8
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 3.3e-08 62.8 37 70.3
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 4.4e-08 62.4 37 70.3
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 5.7e-08 62.0 37 62.2
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 5.7e-08 62.0 41 61.0
Nitab4.5_0004158g0050 Nicotiana tabacum HOM05D004825 ORTHO05D005415 5.7e-08 62.0 37 67.6
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 5.7e-08 62.0 38 65.8
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 7.4e-08 61.6 37 67.6
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 7.4e-08 61.6 37 64.9
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 7.4e-08 61.6 37 64.9
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 7.4e-08 61.6 37 64.9
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 7.4e-08 61.6 37 64.9
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 9.7e-08 61.2 37 67.6
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 9.7e-08 61.2 37 64.9
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 9.7e-08 61.2 37 67.6
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 1.3e-07 60.8 37 64.9
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 1.3e-07 60.8 37 62.2
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.7e-07 60.5 37 62.2
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.7e-07 60.5 63 42.9
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 1.7e-07 60.5 37 67.6
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 1.7e-07 60.5 41 56.1
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 2.2e-07 60.1 63 42.9
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 2.2e-07 60.1 37 59.5
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 2.8e-07 59.7 37 64.9
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 2.8e-07 59.7 52 50.0
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 2.8e-07 59.7 37 64.9
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 3.7e-07 59.3 37 64.9
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 3.7e-07 59.3 37 64.9
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 59.5
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 62.2
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 4.8e-07 58.9 37 64.9
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 6.3e-07 58.5 37 59.5
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 6.3e-07 58.5 37 59.5
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 6.3e-07 58.5 67 40.3
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 6.3e-07 58.5 120 30.8
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 6.3e-07 58.5 52 50.0
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 8.2e-07 58.2 37 59.5
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 8.2e-07 58.2 40 55.0
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 1.1e-06 57.8 37 56.8
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 1.4e-06 57.4 120 30.8
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 1.4e-06 57.4 37 62.2
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 1.4e-06 57.4 37 62.2
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 1.4e-06 57.4 37 59.5
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 1.8e-06 57.0 39 64.1
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 3.1e-06 56.2 37 59.5
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 3.1e-06 56.2 37 56.8
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 3.1e-06 56.2 49 46.9
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 4.1e-06 55.8 49 46.9
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 4.1e-06 55.8 49 46.9
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 4.1e-06 55.8 37 56.8
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 5.3e-06 55.5 49 46.9
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 5.3e-06 55.5 49 46.9
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 5.3e-06 55.5 37 62.2
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 5.3e-06 55.5 37 62.2
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 7.0e-06 55.1 49 46.9
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 9.1e-06 54.7 49 46.9
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 9.1e-06 54.7 49 46.9
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 9.1e-06 54.7 49 46.9
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 9.1e-06 54.7 49 46.9
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 9.1e-06 54.7 37 59.5
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 9.1e-06 54.7 37 59.5


User provided reference genes

Program Settings