Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 6.3e-203 711.1 516 100.0
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 8.3e-187 657.5 519 89.0
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 1.6e-142 510.4 519 75.3
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 4.0e-141 505.8 517 79.1
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 3.4e-140 502.7 519 77.3
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 1.9e-138 496.9 522 77.6
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 7.9e-137 491.5 522 77.6
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 1.9e-135 486.9 522 75.9
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 4.8e-134 482.3 522 74.9
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 4.8e-134 482.3 519 65.5
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 3.1e-133 479.6 519 75.3
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 9.0e-133 478.0 521 64.9
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 4.5e-132 475.7 515 62.7
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 2.5e-130 469.9 516 58.1
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 3.2e-130 469.5 263 89.0
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 5.5e-130 468.8 559 53.7
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 9.4e-130 468.0 526 61.0
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 2.1e-129 466.8 521 70.4
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 3.3e-127 459.5 520 66.2
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 1.3e-126 457.6 532 71.1
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 2.8e-126 456.4 523 70.4
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 3.1e-125 453.0 523 63.7
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 4.1e-125 452.6 523 65.8
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 5.3e-125 452.2 513 54.0
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 2.6e-124 449.9 263 85.9
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 2.6e-124 449.9 519 59.3
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 3.4e-124 449.5 526 63.3
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 4.5e-124 449.1 524 59.2
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 1.3e-123 447.6 518 65.1
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.2e-123 446.8 526 62.9
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.2e-123 446.8 526 62.2
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 2.9e-123 446.4 521 60.5
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 2.9e-123 446.4 515 58.8
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.1e-122 444.5 526 62.7
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 1.4e-122 444.1 521 60.3
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 2.5e-122 443.4 523 66.3
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 7.2e-122 441.8 522 59.6
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 1.2e-121 441.0 520 66.3
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 2.1e-121 440.3 519 64.9
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 2.7e-121 439.9 555 58.6
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 1.0e-120 438.0 533 64.2
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 5.1e-120 435.6 522 66.3
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 8.8e-120 434.9 515 66.8
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.1e-119 434.5 526 63.1
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 2.0e-119 433.7 520 66.0
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 2.0e-119 433.7 521 59.5
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 2.0e-119 433.7 521 59.5
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 5.7e-119 432.2 526 62.9
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 3.7e-118 429.5 516 66.7
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 6.3e-118 428.7 528 59.5
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 1.1e-117 427.9 520 65.2
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 1.4e-117 427.6 534 58.8
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 7.0e-117 425.2 521 62.6
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 1.2e-116 424.5 528 61.9
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 2.0e-116 423.7 523 63.9
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 2.6e-116 423.3 523 61.4
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 7.7e-116 421.8 523 64.6
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 1.7e-115 420.6 520 63.7
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 5.0e-115 419.1 557 56.4
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 5.0e-115 419.1 521 62.4
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 2.5e-114 416.8 520 64.2
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 7.2e-114 415.2 523 60.8
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.6e-113 414.1 519 63.8
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 1.6e-113 414.1 553 63.3
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 2.7e-113 413.3 521 62.4
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 3.6e-113 412.9 523 64.2
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 1.4e-112 411.0 264 79.9
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 2.3e-112 410.2 517 68.3
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.0e-112 409.8 519 69.7
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 3.9e-112 409.5 517 59.8
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 8.8e-112 408.3 519 64.0
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 1.1e-111 407.9 533 62.1
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 1.1e-111 407.9 488 63.5
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 2.0e-111 407.1 264 79.5
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 4.4e-111 406.0 517 67.7
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 9.7e-111 404.8 518 66.2
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.3e-110 404.4 264 78.8
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 1.7e-110 404.1 502 65.9
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 2.2e-110 403.7 264 79.2
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 2.2e-110 403.7 259 78.8
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 8.2e-110 401.7 523 61.6
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 1.4e-109 401.0 264 76.5
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 3.1e-109 399.8 522 62.5
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 5.3e-109 399.1 572 58.2
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 9.1e-109 398.3 265 77.0
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 1.2e-108 397.9 552 65.0
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 1.2e-108 397.9 276 72.8
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 1.6e-108 397.5 518 68.7
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 3.5e-108 396.4 265 77.4
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 1.0e-107 394.8 538 58.6
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 2.2e-107 393.7 514 60.5
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 2.9e-107 393.3 582 60.7
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 3.2e-106 389.8 529 52.4
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 3.2e-106 389.8 517 66.2
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 3.2e-106 389.8 522 60.0
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 7.2e-106 388.7 522 59.8
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 2.1e-105 387.1 263 76.0
QL06p028841 Quercus lobata HOM05D004025 ORTHO05D004929 4.7e-105 386.0 274 75.9
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 3.3e-103 379.8 262 74.8
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 4.4e-103 379.4 516 50.0
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 4.4e-103 379.4 516 50.0
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 5.7e-103 379.0 262 74.4
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 7.5e-103 378.6 262 74.0
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 7.5e-103 378.6 262 74.0
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 7.5e-103 378.6 589 61.3
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 1.3e-102 377.9 260 74.2
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 2.8e-102 376.7 262 73.7
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 2.8e-102 376.7 262 73.7
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 2.8e-102 376.7 518 63.9
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 3.7e-102 376.3 519 60.7
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 4.8e-102 375.9 262 73.3
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 6.3e-102 375.6 262 73.3
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 8.3e-102 375.2 263 73.4
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 1.8e-101 374.0 266 72.2
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 5.3e-101 372.5 262 72.9
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 1.6e-100 370.9 266 71.8
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 2.7e-100 370.2 516 47.5
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 1.0e-99 368.2 260 71.2
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 1.0e-99 368.2 252 75.4
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 1.3e-99 367.9 260 71.2
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 1.3e-99 367.9 520 59.6
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 1.7e-99 367.5 260 71.2
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 1.7e-99 367.5 260 71.2
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 3.8e-99 366.3 260 70.8
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.5e-98 364.4 263 71.5
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 1.6e-97 360.9 263 71.1
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 3.6e-97 359.8 279 69.2
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 1.3e-94 351.3 586 47.1
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 2.8e-94 350.1 285 62.8
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 6.3e-94 349.0 268 67.5
Medtr3g096110 Medicago truncatula HOM05D004025 ORTHO05D004929 3.1e-80 303.5 216 72.7
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 4.4e-79 299.7 598 53.8
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 5.8e-79 299.3 522 46.4
CDE08G1435 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 3.2e-77 293.5 218 72.5
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 2.2e-70 270.8 432 63.4
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 2.2e-70 270.8 272 54.8
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 8.1e-65 252.3 298 50.0
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.3e-62 245.0 530 37.5
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.7e-62 244.6 529 37.4
Prupe.3G159200 Prunus persica HOM05D004025 ORTHO05D004929 6.4e-62 242.7 160 77.5
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 3.9e-59 233.4 273 49.5
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 6.2e-57 226.1 274 49.3
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 1.2e-44 185.3 134 61.2
Zm00001eb087390 Zea mays HOM05D004025 ORTHO05D004929 1.1e-42 178.7 179 54.2
Cre06.g304650 Chlamydomonas reinhardtii HOM05D004025 ORTHO05D004929 1.1e-18 99.0 199 29.1
VMungo1127G1876 Vigna mungo HOM05D001773 ORTHO05D001710 2.0e-15 88.2 60 68.3
Zm00001eb027210 Zea mays HOM05D004025 ORTHO05D021029 4.2e-13 80.5 72 56.9
Zm00001eb114410 Zea mays HOM05D004025 ORTHO05D021029 1.2e-12 79.0 73 54.8
Os11g0209700 Oryza sativa ssp. japonica HOM05D004025 ORTHO05D004929 2.7e-12 77.8 70 57.1
Zm00001eb326430 Zea mays HOM05D004025 ORTHO05D021029 6.1e-12 76.6 72 55.6
Zm00001eb352480 Zea mays HOM05D004025 ORTHO05D021029 6.1e-12 76.6 72 55.6
Zm00001eb361560 Zea mays HOM05D004025 ORTHO05D021029 6.1e-12 76.6 72 55.6
Zm00001eb377950 Zea mays HOM05D004025 ORTHO05D021029 6.1e-12 76.6 72 55.6
TPR.G7026 Trifolium pratense HOM05D004025 ORTHO05D004929 3.0e-11 74.3 58 67.2


User provided reference genes

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