Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 3.3e-87 325.1 172 100.0
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 8.3e-75 283.9 173 86.1
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.3e-56 223.4 174 69.5
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.5e-55 219.2 182 70.9
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 2.5e-55 219.2 182 70.9
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.8e-54 214.9 179 67.6
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.2e-54 214.5 179 67.6
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 1.4e-53 213.4 176 68.2
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 1.4e-53 213.4 174 67.2
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.8e-53 213.0 181 68.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 4.0e-53 211.8 178 66.3
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 5.3e-53 211.5 179 66.5
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 6.9e-53 211.1 178 67.4
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.6e-52 209.1 178 66.9
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 3.4e-52 208.8 179 68.2
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 5.8e-52 208.0 177 66.7
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 5.8e-52 208.0 186 65.1
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 7.6e-52 207.6 176 66.5
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 7.6e-52 207.6 182 65.4
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 9.9e-52 207.2 183 64.5
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 9.9e-52 207.2 178 65.7
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.3e-51 206.8 181 63.5
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.3e-51 206.8 176 67.0
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.7e-51 206.5 179 66.5
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.7e-51 206.5 181 65.2
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.7e-51 206.5 178 68.0
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 2.2e-51 206.1 183 63.9
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 2.2e-51 206.1 182 65.9
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.8e-51 205.3 179 67.6
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 4.9e-51 204.9 179 66.5
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 8.4e-51 204.1 178 66.3
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 8.4e-51 204.1 177 64.4
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.1e-50 203.8 181 64.1
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.1e-50 203.8 180 65.0
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 1.4e-50 203.4 178 65.2
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.4e-50 203.4 176 65.3
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 2.4e-50 202.6 177 63.3
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 2.4e-50 202.6 177 66.1
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 2.4e-50 202.6 176 65.3
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 3.2e-50 202.2 178 64.0
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.2e-50 202.2 176 65.9
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 4.2e-50 201.8 179 65.4
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 9.3e-50 200.7 177 64.4
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 9.3e-50 200.7 176 64.2
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.2e-49 200.3 178 65.2
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.2e-49 200.3 177 64.4
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.2e-49 200.3 177 64.4
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 1.6e-49 199.9 180 63.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 2.1e-49 199.5 181 63.5
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.7e-49 199.1 177 63.8
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.7e-49 199.1 184 62.0
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 2.7e-49 199.1 175 65.7
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.5e-49 198.7 181 63.5
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.5e-49 198.7 178 65.7
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 4.6e-49 198.4 177 66.1
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 6.0e-49 198.0 173 63.0
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 7.9e-49 197.6 175 64.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.0e-48 197.2 176 62.5
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 1.8e-48 196.4 183 60.7
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 2.3e-48 196.1 181 63.0
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 2.3e-48 196.1 179 62.0
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 3.0e-48 195.7 180 63.9
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 3.9e-48 195.3 180 62.8
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 5.1e-48 194.9 175 62.9
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.7e-48 194.5 176 60.8
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 6.7e-48 194.5 176 63.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.1e-47 193.7 176 61.9
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.1e-47 193.7 172 61.6
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.5e-47 193.4 180 63.3
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.5e-47 192.6 177 64.4
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.5e-47 192.6 179 61.5
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 4.3e-47 191.8 178 61.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 4.3e-47 191.8 176 64.2
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 5.6e-47 191.4 175 62.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 5.6e-47 191.4 175 62.3
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 9.6e-47 190.7 177 63.3
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.3e-46 190.3 175 64.0
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 2.1e-46 189.5 177 62.7
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.8e-46 189.1 174 60.9
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 2.8e-46 189.1 176 61.9
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.8e-46 189.1 174 62.6
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.2e-46 188.0 148 69.6
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 8.1e-46 187.6 175 61.7
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 8.1e-46 187.6 174 63.2
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 8.1e-46 187.6 179 62.6
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 1.1e-45 187.2 174 60.9
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.1e-45 187.2 173 61.3
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.1e-45 187.2 182 62.6
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 3.1e-45 185.7 180 61.1
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 4.0e-45 185.3 185 59.5
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 5.3e-45 184.9 178 60.7
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 5.3e-45 184.9 173 60.1
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 9.0e-45 184.1 183 57.4
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 9.0e-45 184.1 175 62.3
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 2.0e-44 183.0 183 61.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 2.0e-44 183.0 134 68.7
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-44 183.0 180 61.1
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 2.6e-44 182.6 178 60.1
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 2.6e-44 182.6 178 60.1
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 2.6e-44 182.6 172 59.9
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 3.4e-44 182.2 183 61.2
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.4e-44 182.2 176 63.1
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.4e-44 182.2 176 63.1
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 3.4e-44 182.2 183 61.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 4.5e-44 181.8 178 63.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 4.5e-44 181.8 175 61.1
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 5.8e-44 181.4 176 63.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.3e-43 180.3 181 56.9
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 2.2e-43 179.5 172 59.3
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 3.8e-43 178.7 185 59.5
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 3.8e-43 178.7 113 79.6
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.1e-41 172.9 123 69.1
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.0e-40 170.6 114 72.8
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.8e-40 169.9 173 55.5
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.1e-39 167.2 109 75.2
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 3.1e-37 159.1 182 54.9
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 2.2e-35 152.9 149 63.8
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 4.9e-35 151.8 175 56.6
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 4.9e-35 151.8 175 56.6
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.9e-34 149.8 151 62.3
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.9e-34 149.8 152 61.8
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 6.0e-33 144.8 148 61.5
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 4.3e-31 138.7 82 76.8
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 4.3e-31 138.7 160 49.4
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.0e-27 127.5 148 56.8
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 5.0e-27 125.2 148 56.1
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 9.3e-26 120.9 74 78.4
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 3.6e-25 119.0 74 77.0
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 3.6e-25 119.0 72 79.2
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-24 117.5 74 75.7
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 3.3e-23 112.5 115 54.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 3.3e-23 112.5 132 59.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 5.7e-23 111.7 161 46.0
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.7e-22 110.2 122 51.6
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 4.8e-22 108.6 176 43.8
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 2.1e-17 93.2 80 65.0
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 4.7e-17 92.0 74 62.2
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 2.3e-16 89.7 148 42.6
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.3e-14 84.0 78 51.3
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 4.1e-13 79.0 138 42.8
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 9.1e-13 77.8 110 50.9
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.2e-12 77.4 107 55.1
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 8.0e-09 64.7 107 43.9
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 1.4e-08 63.9 119 50.4
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-06 57.4 30 76.7


User provided reference genes

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