Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12719 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 4.6e-91 337.8 164 100.0
Rhsim08G0075100 Rhododendron simsii HOM05D002401 ORTHO05D006143 7.5e-65 250.8 159 78.0
Rhsim06G0039300 Rhododendron simsii HOM05D002401 ORTHO05D006143 1.7e-64 249.6 153 81.0
vmacro21595 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 3.6e-59 231.9 156 75.0
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 1.3e-56 223.4 165 67.3
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 5.4e-55 218.0 156 66.0
vmacro21593 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 6.5e-53 211.1 154 73.4
Lj1A1064T34 Lonicera japonica HOM05D002401 ORTHO05D006143 8.6e-53 210.7 156 64.1
CSS0037792 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 1.1e-52 210.3 156 64.7
CSS0045600 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 1.1e-52 210.3 156 64.7
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 4.2e-52 208.4 156 63.5
GSVIVG01011051001 Vitis vinifera HOM05D002401 ORTHO05D006143 4.2e-52 208.4 156 64.1
Oeu015608.1 Olea europaea HOM05D002401 ORTHO05D006143 5.5e-52 208.0 156 65.4
Thecc.08G019900 Theobroma cacao HOM05D002401 ORTHO05D006143 7.2e-52 207.6 156 64.1
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 9.5e-52 207.2 156 64.7
QL02p010939 Quercus lobata HOM05D002401 ORTHO05D006143 1.2e-51 206.8 156 62.8
Oeu019097.1 Olea europaea HOM05D002401 ORTHO05D006143 2.1e-51 206.1 156 62.2
COL.COLO4_26393 Corchorus olitorius HOM05D002401 ORTHO05D006143 2.8e-51 205.7 152 65.1
Migut.N02680 Erythranthe guttata HOM05D002401 ORTHO05D006143 3.6e-51 205.3 156 61.5
Cc07_g16250 Coffea canephora HOM05D002401 ORTHO05D006143 1.0e-50 203.8 156 63.5
Dinv29837 Davidia involucrata HOM05D002401 ORTHO05D006143 1.8e-50 203.0 152 64.5
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 2.3e-50 202.6 156 62.2
Carub.0001s3634 Capsella rubella HOM05D002401 ORTHO05D006143 4.0e-50 201.8 156 60.3
Duzib041G0147 Durio zibethinus HOM05D002401 ORTHO05D006143 4.0e-50 201.8 156 60.3
Gohir.A05G197900 Gossypium hirsutum HOM05D002401 ORTHO05D006143 4.0e-50 201.8 156 60.9
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 5.2e-50 201.4 156 61.5
Gorai.009G206100 Gossypium raimondii HOM05D002401 ORTHO05D006143 5.2e-50 201.4 156 60.3
Cfa020647 Carpinus fangiana HOM05D002401 ORTHO05D006143 6.8e-50 201.1 156 60.3
Gohir.D05G200800 Gossypium hirsutum HOM05D002401 ORTHO05D006143 6.8e-50 201.1 156 60.3
SalBow7G0739 Salvia bowleyana HOM05D002401 ORTHO05D006143 8.9e-50 200.7 156 60.3
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 1.2e-49 200.3 156 61.5
EL10Ac5g11128 Beta vulgaris HOM05D002401 ORTHO05D006143 1.5e-49 199.9 165 59.4
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 2.0e-49 199.5 156 59.6
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 2.0e-49 199.5 152 61.8
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 2.6e-49 199.1 152 61.8
Lsat_1_v5_gn_4_122901 Lactuca sativa HOM05D002401 ORTHO05D006143 3.4e-49 198.7 156 60.3
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 5.7e-49 198.0 156 59.0
A08p18900 Brassica napus HOM05D002401 ORTHO05D006143 5.7e-49 198.0 156 59.6
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 5.7e-49 198.0 152 63.2
BcaC09g51892 Brassica carinata HOM05D002401 ORTHO05D006143 7.5e-49 197.6 156 59.0
BcaNung03418 Brassica carinata HOM05D002401 ORTHO05D006143 7.5e-49 197.6 156 59.6
BcaB03g12674 Brassica carinata HOM05D002401 ORTHO05D006143 9.8e-49 197.2 156 59.0
C01p07880 Brassica napus HOM05D002401 ORTHO05D006143 1.3e-48 196.8 156 58.3
BolC1t00775H Brassica oleracea HOM05D002401 ORTHO05D006143 1.3e-48 196.8 156 58.3
PSO170G5894 Papaver somniferum HOM05D002401 ORTHO05D006143 1.3e-48 196.8 153 60.1
THA.LOC104803396 Tarenaya hassleriana HOM05D002401 ORTHO05D006143 1.3e-48 196.8 165 58.8
BraA01t00664Z Brassica rapa HOM05D002401 ORTHO05D006143 1.7e-48 196.4 156 58.3
CsaV3_5G035090 Cucumis sativus L. HOM05D002401 ORTHO05D006143 1.7e-48 196.4 156 59.0
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 2.2e-48 196.1 156 58.3
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 2.2e-48 196.1 165 58.2
MSTRG.24312 Avicennia marina HOM05D002401 ORTHO05D006143 2.8e-48 195.7 156 60.9
MELO3C012322.2 Cucumis melo HOM05D002401 ORTHO05D006143 2.8e-48 195.7 156 58.3
TWI56G0576 Tripterygium wilfordii HOM05D002401 ORTHO05D006143 3.7e-48 195.3 156 59.0
Thhalv10025943m.g Eutrema salsugineum HOM05D002401 ORTHO05D006143 4.9e-48 194.9 156 59.0
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 6.3e-48 194.5 156 57.7
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 6.3e-48 194.5 156 57.7
AUR62008526 Chenopodium quinoa HOM05D002401 ORTHO05D006143 6.3e-48 194.5 156 60.9
Potri.002G131000 Populus trichocarpa HOM05D002401 ORTHO05D006143 6.3e-48 194.5 156 59.0
Sp1g34610 Schrenkiella parvula HOM05D002401 ORTHO05D006143 6.3e-48 194.5 156 57.7
Carub.0007s0947 Capsella rubella HOM05D002401 ORTHO05D006143 8.3e-48 194.1 156 57.7
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 8.3e-48 194.1 150 61.3
ClCG05G022050 Citrullus lanatus HOM05D002667 ORTHO05D006143 1.1e-47 193.7 156 57.7
PSO700G0184 Papaver somniferum HOM05D002401 ORTHO05D006143 1.1e-47 193.7 156 58.3
Sed0016228 Sechium edule HOM05D002401 ORTHO05D006143 1.1e-47 193.7 156 57.1
MBI16_g31342_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 1.4e-47 193.4 156 58.3
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 1.8e-47 193.0 156 60.3
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 1.8e-47 193.0 156 58.3
Sp7g28930 Schrenkiella parvula HOM05D002401 ORTHO05D006143 1.8e-47 193.0 156 57.1
HPP92_020226 Vanilla planifolia HOM05D002401 ORTHO05D006143 2.4e-47 192.6 156 58.3
AT1G47578 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 3.1e-47 192.2 152 59.9
CARHR238960 Cardamine hirsuta HOM05D002401 ORTHO05D006143 3.1e-47 192.2 156 56.4
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 3.1e-47 192.2 156 58.3
Ah.11g047790 Amaranthus hybridus HOM05D000501 ORTHO05D006143 4.1e-47 191.8 156 60.9
MBI16_g45778_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 4.1e-47 191.8 156 58.3
Aa31LG2G19270 Aethionema arabicum HOM05D002401 ORTHO05D006143 5.4e-47 191.4 156 56.4
CARHR037210 Cardamine hirsuta HOM05D002401 ORTHO05D006143 5.4e-47 191.4 156 56.4
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 9.2e-47 190.7 153 57.5
FAN15G1231 Fragaria x ananassa HOM05D002401 ORTHO05D006143 9.2e-47 190.7 156 57.7
RcHm_v2.0_Chr6g0294461 Rosa chinensis HOM05D002401 ORTHO05D006143 1.2e-46 190.3 156 57.7
FAN27G1995 Fragaria x ananassa HOM05D002401 ORTHO05D006143 2.0e-46 189.5 156 57.1
Prupe.5G012900 Prunus persica HOM05D002401 ORTHO05D006143 2.0e-46 189.5 164 56.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.0e-46 189.5 156 58.3
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 2.7e-46 189.1 153 59.5
AUR62021564 Chenopodium quinoa HOM05D002401 ORTHO05D006143 3.5e-46 188.7 156 60.9
FAN24G0239 Fragaria x ananassa HOM05D002401 ORTHO05D006143 3.5e-46 188.7 156 57.1
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 7.8e-46 187.6 156 55.1
FAN20G2779 Fragaria x ananassa HOM05D002401 ORTHO05D006143 7.8e-46 187.6 156 57.1
Os12g0596000 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D006143 1.0e-45 187.2 156 55.8
FvH4_2g26090 Fragaria vesca HOM05D002401 ORTHO05D006143 1.3e-45 186.8 150 58.7
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 1.3e-45 186.8 153 57.5
PSO170G6637 Papaver somniferum HOM05D002401 ORTHO05D006143 1.3e-45 186.8 157 58.6
Manes.05G166100 Manihot esculenta HOM05D002401 ORTHO05D006143 1.7e-45 186.4 156 55.8
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 3.8e-45 185.3 151 57.6
MD06G1010800 Malus domestica HOM05D002401 ORTHO05D006143 1.5e-44 183.3 156 55.8
ECA232G3633 Erigeron canadensis HOM05D002401 ORTHO05D006143 2.5e-44 182.6 156 56.4
Hund09910 Selenicereus undatus HOM05D002401 ORTHO05D006143 3.3e-44 182.2 156 57.7
Zm00001eb030760 Zea mays HOM05D002401 ORTHO05D006143 4.3e-44 181.8 156 55.8
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 9.5e-44 180.6 146 59.6
AUR62031756 Chenopodium quinoa HOM05D002401 ORTHO05D006143 1.2e-43 180.3 156 59.0
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 3.6e-43 178.7 142 60.6
Sc02g0006690 Simmondsia chinensis HOM05D002401 ORTHO05D006143 4.7e-43 178.3 156 55.1
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 1.8e-42 176.4 156 53.8
arahy.Tifrunner.gnm1.ann1.A6BGRK Arachis hypogaea HOM05D002401 ORTHO05D006143 2.3e-42 176.0 156 55.1
arahy.Tifrunner.gnm1.ann1.JWFJ3V Arachis hypogaea HOM05D002401 ORTHO05D006143 2.3e-42 176.0 156 55.1
Glyma.04G034800 Glycine max HOM05D002401 ORTHO05D006143 5.2e-42 174.9 165 52.7
arahy.Tifrunner.gnm1.ann1.PMC9AK Arachis hypogaea HOM05D002401 ORTHO05D006143 1.2e-41 173.7 156 54.5
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 1.5e-41 173.3 152 54.6
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea HOM05D002401 ORTHO05D006143 4.4e-41 171.8 156 53.8
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 4.4e-41 171.8 152 53.9
Glyma.18G099900 Glycine max HOM05D002401 ORTHO05D006143 5.8e-41 171.4 165 52.7
DCAR_019427 Daucus carota HOM05D002401 ORTHO05D006143 1.7e-40 169.9 156 55.1
DCAR_019493 Daucus carota HOM05D002401 ORTHO05D006143 2.2e-40 169.5 151 58.3
TPR.G12442 Trifolium pratense HOM05D002401 ORTHO05D006143 2.9e-40 169.1 156 54.5
Actinidia15286 Actinidia chinensis HOM05D001143 ORTHO05D001457 1.1e-39 167.2 124 68.5
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 1.4e-39 166.8 165 53.9
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 1.8e-39 166.4 156 53.2
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 3.2e-39 165.6 156 53.8
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 1.6e-38 163.3 156 53.2
SEGI_06323 Sequoiadendron giganteum HOM05D002401 ORTHO05D006143 2.0e-38 162.9 156 50.0
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 7.8e-38 161.0 156 51.3
Lj1g0004451 Lotus japonicus HOM05D002401 ORTHO05D006143 1.3e-37 160.2 157 51.0
Pp3c12_18570 Physcomitrium patens HOM05D002401 ORTHO05D006143 1.3e-37 160.2 156 49.4
SMO118G0246 Selaginella moellendorffii HOM05D002401 ORTHO05D006143 2.3e-37 159.5 155 50.3
AUR62036501 Chenopodium quinoa HOM05D002857 ORTHO05D007919 3.9e-37 158.7 134 61.2
Medtr3g111580 Medicago truncatula HOM05D002401 ORTHO05D006143 3.9e-37 158.7 151 52.3
Nn7g38029 Nelumbo nucifera HOM05D002401 ORTHO05D006143 3.3e-36 155.6 152 52.0
Mapoly0078s0004 Marchantia polymorpha HOM05D002401 ORTHO05D006143 9.5e-36 154.1 156 45.5
SHI04962 Sapria himalayana HOM05D002401 ORTHO05D006143 3.6e-35 152.1 156 48.7
ATR0733G118 Amborella trichopoda HOM05D002401 ORTHO05D006143 4.0e-34 148.7 134 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2173 Anthoceros agrestis HOM05D002401 ORTHO05D006143 4.4e-33 145.2 152 49.3
QL04p005176 Quercus lobata HOM05D002401 ORTHO05D006143 1.2e-30 137.1 84 66.7
AUR62023962 Chenopodium quinoa HOM05D002401 ORTHO05D006143 1.5e-28 130.2 114 60.5
Solyc04g079750.4 Solanum lycopersicum HOM05D002401 ORTHO05D006143 1.5e-28 130.2 107 59.8
CDE09G0871 Ceratophyllum demersum HOM05D002401 ORTHO05D006143 3.6e-27 125.6 81 64.2
Cpa.g.sc64.28 Carica papaya HOM05D002401 ORTHO05D006143 2.6e-25 119.4 114 57.0
CBR_g38019 Chara braunii HOM05D002401 ORTHO05D006143 2.6e-25 119.4 172 37.2
Lj4g0000942 Lotus japonicus HOM05D002401 ORTHO05D006143 1.7e-24 116.7 152 42.1
BcaC01g01116 Brassica carinata HOM05D002401 ORTHO05D006143 3.2e-23 112.5 107 52.3
Cre16.g675250 Chlamydomonas reinhardtii HOM05D002401 ORTHO05D006143 1.1e-20 104.0 151 39.1
MCO07G632 Micromonas commoda HOM05D002401 ORTHO05D006143 8.1e-19 97.8 172 34.9
QL04p005174 Quercus lobata HOM05D002401 ORTHO05D006143 3.4e-17 92.4 55 78.2
Haze_17608 Corylus avellana HOM05D002401 ORTHO05D006143 4.9e-16 88.6 55 72.7
PRCOL_00000083 Prasinoderma coloniale HOM05D002401 ORTHO05D006143 3.2e-15 85.9 115 43.5
C03p88310 Brassica napus HOM05D002401 ORTHO05D006143 2.5e-12 76.3 113 40.7
MCO04G499 Micromonas commoda HOM05D002401 ORTHO05D007109 7.6e-09 64.7 153 31.4
TPR.G10101 Trifolium pratense HOM05D002401 ORTHO05D006143 1.7e-08 63.5 62 48.4
CBR_g18683 Chara braunii HOM05D002401 ORTHO05D007109 4.9e-08 62.0 124 31.5
Cre01.g010350 Chlamydomonas reinhardtii HOM05D002401 ORTHO05D007109 9.3e-07 57.8 151 33.8
Ciclev10016532m.g Citrus clementina HOM05D002401 ORTHO05D007109 9.3e-07 57.8 151 29.1
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 9.3e-07 57.8 152 31.6
AagrBONN_evm.TU.Sc2ySwM_362.1505 Anthoceros agrestis HOM05D002401 ORTHO05D007109 1.2e-06 57.4 150 31.3
Actinidia39375 Actinidia chinensis HOM05D002401 ORTHO05D007109 1.6e-06 57.0 150 30.7
Dinv08058 Davidia involucrata HOM05D002401 ORTHO05D007109 1.6e-06 57.0 150 30.7
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.7e-06 56.2 150 30.0
SEGI_03744 Sequoiadendron giganteum HOM05D002401 ORTHO05D007109 2.7e-06 56.2 151 27.8
MSTRG.225 Avicennia marina HOM05D002401 ORTHO05D007109 4.6e-06 55.5 151 30.5
Glyma.08G314300 Glycine max HOM05D002401 ORTHO05D006143 4.6e-06 55.5 48 52.1
Gorai.013G249500 Gossypium raimondii HOM05D002401 ORTHO05D007109 4.6e-06 55.5 150 29.3
RcHm_v2.0_Chr5g0079311 Rosa chinensis HOM05D002401 ORTHO05D007109 4.6e-06 55.5 150 29.3
CSS0016162 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 6.0e-06 55.1 150 29.3
CSS0040450 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 6.0e-06 55.1 150 29.3
Gohir.D13G218700 Gossypium hirsutum HOM05D002401 ORTHO05D007109 6.0e-06 55.1 150 28.7
vmacro21025 Vaccinium macrocarpon HOM05D002401 ORTHO05D007109 6.0e-06 55.1 150 30.0
FvH4_3g43830 Fragaria vesca HOM05D002401 ORTHO05D007109 7.8e-06 54.7 150 29.3
FAN11G0540 Fragaria x ananassa HOM05D002401 ORTHO05D007109 7.8e-06 54.7 150 29.3
Gohir.A13G215000 Gossypium hirsutum HOM05D002401 ORTHO05D007109 7.8e-06 54.7 150 29.3
MBI19_g15086_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D007109 7.8e-06 54.7 153 29.4
Sc16g0011880 Simmondsia chinensis HOM05D002401 ORTHO05D007109 7.8e-06 54.7 150 31.3
unitig_52.g17159 Utricularia gibba HOM05D002401 ORTHO05D007109 7.8e-06 54.7 152 30.3


User provided reference genes

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