Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 8.3e-194 680.2 357 100.0
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.2e-99 367.5 357 61.6
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 9.8e-86 321.2 204 80.9
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 4.1e-84 315.8 205 80.5
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 4.1e-84 315.8 204 79.9
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.2e-83 314.3 203 79.3
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.6e-83 313.9 204 80.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.7e-82 310.5 245 69.0
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.3e-79 300.1 201 75.6
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 3.0e-79 299.7 200 77.0
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 6.8e-79 298.5 200 76.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.6e-78 296.6 248 66.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 9.8e-78 294.7 246 67.1
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.4e-76 290.8 216 71.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.8e-76 290.4 200 76.0
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.4e-76 288.9 198 76.3
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 9.2e-76 288.1 203 72.9
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 2.0e-75 287.0 204 73.5
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.7e-75 286.6 203 71.4
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.0e-74 284.6 242 64.0
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.3e-74 284.3 201 73.6
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.3e-74 284.3 209 74.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.7e-74 283.9 209 71.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.7e-74 283.9 201 73.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 3.0e-74 283.1 201 74.6
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 5.0e-74 282.3 241 63.9
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 6.6e-74 282.0 199 74.4
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.9e-73 280.4 202 72.3
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.9e-73 280.4 257 61.9
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.9e-73 280.4 208 72.1
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.5e-73 280.0 204 74.0
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.5e-73 280.0 201 74.6
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 5.6e-73 278.9 198 73.2
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 5.6e-73 278.9 200 75.5
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.1e-72 276.9 202 71.8
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.1e-72 276.9 198 75.3
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.1e-72 276.9 202 71.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 4.7e-72 275.8 219 68.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 6.2e-72 275.4 202 71.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 8.0e-72 275.0 207 72.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 8.0e-72 275.0 250 61.6
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.8e-71 273.9 200 74.0
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.8e-71 273.9 245 61.6
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 2.3e-71 273.5 204 70.1
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-71 273.1 204 67.2
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.0e-71 272.7 202 70.3
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 4.0e-71 272.7 204 67.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 4.0e-71 272.7 209 70.8
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 5.2e-71 272.3 202 70.3
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 5.2e-71 272.3 241 61.0
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 5.2e-71 272.3 250 60.4
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 8.9e-71 271.6 189 74.1
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.2e-70 271.2 202 71.3
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.2e-70 271.2 202 68.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.5e-70 270.8 250 61.6
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.0e-70 270.4 202 69.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.0e-70 270.4 202 69.8
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 3.4e-70 269.6 206 71.8
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.4e-70 269.6 206 71.8
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.4e-70 269.6 206 71.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.5e-70 268.5 196 68.9
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 9.8e-70 268.1 197 67.0
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.3e-69 267.7 198 70.7
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.2e-69 266.9 201 68.2
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.2e-69 266.9 201 68.2
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.9e-69 266.5 206 70.9
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.7e-69 266.2 206 70.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 4.9e-69 265.8 201 68.7
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 4.9e-69 265.8 205 67.3
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.9e-69 265.8 199 70.9
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.4e-69 265.4 200 70.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.2e-68 263.1 201 67.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 4.1e-68 262.7 207 68.6
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 9.2e-68 261.5 203 67.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 9.2e-68 261.5 206 68.9
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-67 261.2 205 68.8
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.6e-67 260.8 205 68.8
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.6e-67 260.8 194 73.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.7e-67 260.0 201 67.7
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 4.6e-67 259.2 247 61.1
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.6e-67 259.2 208 66.3
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 7.8e-67 258.5 199 69.8
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 7.8e-67 258.5 199 69.8
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-66 257.3 202 68.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.7e-66 257.3 204 67.2
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.7e-66 257.3 202 66.3
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 2.3e-66 256.9 214 68.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 5.0e-66 255.8 178 75.8
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 5.0e-66 255.8 204 66.7
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 6.6e-66 255.4 202 67.3
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.6e-66 255.0 271 55.0
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.3e-65 253.1 214 68.7
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.8e-64 250.0 205 65.9
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 3.6e-64 249.6 202 65.3
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.6e-64 249.6 213 66.7
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.2e-64 248.8 213 66.7
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.1e-63 246.5 200 67.5
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.2e-62 244.6 215 65.6
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.4e-62 243.0 210 66.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 7.5e-62 241.9 194 63.9
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.7e-61 240.7 187 68.4
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.2e-60 236.5 204 64.7
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.1e-60 236.1 199 63.8
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 7.1e-60 235.3 243 55.1
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.1e-59 233.8 202 62.4
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.1e-59 233.8 191 62.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 2.7e-59 233.4 199 62.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.5e-59 233.0 168 74.4
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 4.6e-59 232.6 199 61.8
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.3e-58 231.1 205 60.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.9e-58 229.6 162 74.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.5e-57 227.6 220 60.5
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.5e-57 226.9 162 72.8
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.3e-57 226.1 218 56.9
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.3e-57 225.3 212 58.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 9.5e-57 224.9 218 56.9
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 9.5e-57 224.9 200 60.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.5e-57 224.9 211 58.3
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.1e-56 223.8 220 59.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.1e-56 223.8 220 59.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.1e-56 221.9 214 59.3
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.1e-55 221.5 193 64.8
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.4e-55 221.1 197 61.4
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-55 220.7 162 71.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 3.1e-55 219.9 162 69.8
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 3.1e-55 219.9 162 69.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.2e-54 218.0 191 62.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.0e-54 217.2 218 59.2
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.9e-53 212.6 187 61.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.6e-51 207.6 198 57.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.7e-50 204.1 148 71.6
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.2e-46 191.4 199 58.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 6.4e-45 185.7 178 61.8
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.4e-44 182.6 186 57.5
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.5e-43 179.9 128 73.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 3.0e-42 176.8 192 51.0
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.5e-41 173.7 197 50.8
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.3e-40 171.4 188 56.4
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 8.1e-40 168.7 196 50.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 2.6e-38 163.7 197 47.7
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.7e-37 161.0 217 46.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.4e-37 158.7 115 73.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.7e-35 153.7 115 67.8
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.5e-35 153.3 195 48.2
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 6.7e-34 149.1 212 47.6
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.6e-33 146.0 96 83.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.3e-32 144.8 97 80.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.0e-30 137.5 199 44.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.2e-28 129.8 196 41.3
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 3.5e-27 126.7 86 69.8
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.0e-23 113.2 93 57.0
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 4.8e-16 89.7 84 60.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 4.1e-15 86.7 107 47.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.3e-12 75.5 146 43.2
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 4.6e-11 73.2 61 55.7
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 3.0e-10 70.5 61 52.5
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 2.4e-07 60.8 114 35.1
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 5.3e-07 59.7 63 55.6
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.6e-06 57.4 90 38.9


User provided reference genes

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