Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.5e-77 292.7 147 100.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.8e-68 261.5 134 95.5
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 6.1e-58 227.6 128 85.2
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 5.1e-57 224.6 128 83.6
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 5.1e-57 224.6 128 83.6
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.9e-56 222.6 128 82.0
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 2.5e-56 222.2 124 85.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 4.3e-56 221.5 130 80.0
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 7.4e-56 220.7 124 84.7
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.7e-55 219.5 126 82.5
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.8e-55 218.8 128 80.5
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.7e-55 218.4 127 81.1
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.3e-55 217.6 126 80.2
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.1e-54 216.9 128 79.7
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.4e-54 216.5 127 80.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.4e-54 216.5 128 83.6
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.8e-54 216.1 128 82.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.4e-54 215.7 124 82.3
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.4e-54 215.7 124 83.1
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.1e-54 215.3 126 81.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.1e-54 214.9 126 81.7
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.3e-54 214.5 126 81.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 9.1e-54 213.8 126 81.0
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 9.1e-54 213.8 128 80.5
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 9.1e-54 213.8 128 79.7
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.2e-53 213.4 128 78.1
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.0e-53 212.6 128 78.9
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 2.0e-53 212.6 128 79.7
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.0e-53 212.6 126 81.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.0e-53 212.6 126 81.0
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.6e-53 212.2 124 79.8
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.6e-53 212.2 128 78.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 2.6e-53 212.2 129 77.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 2.6e-53 212.2 134 75.4
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 2.6e-53 212.2 134 75.4
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 3.4e-53 211.8 124 80.6
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.4e-53 211.8 124 80.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 5.9e-53 211.1 128 78.9
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 7.7e-53 210.7 124 80.6
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 7.7e-53 210.7 124 79.8
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.0e-52 210.3 128 78.9
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.3e-52 209.9 124 79.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.7e-52 209.5 137 73.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.2e-52 209.1 135 74.8
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.9e-52 208.8 128 78.9
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.9e-52 208.8 124 79.0
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.8e-52 208.4 128 78.9
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.8e-52 208.4 124 79.0
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 5.0e-52 208.0 132 75.0
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.5e-52 207.6 124 79.0
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 6.5e-52 207.6 128 77.3
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 8.5e-52 207.2 128 77.3
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.1e-51 206.8 124 76.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.1e-51 206.8 131 76.3
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.4e-51 206.5 124 77.4
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.4e-51 206.5 129 78.3
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.2e-51 205.3 129 78.3
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.2e-51 205.3 124 78.2
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 4.2e-51 204.9 125 80.0
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 5.5e-51 204.5 124 77.4
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 5.5e-51 204.5 124 78.2
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 5.5e-51 204.5 124 78.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 5.5e-51 204.5 128 75.8
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.2e-51 204.1 128 77.3
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 7.2e-51 204.1 128 77.3
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 7.2e-51 204.1 124 77.4
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 9.4e-51 203.8 124 79.0
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.6e-50 203.0 124 78.2
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.1e-50 202.6 128 77.3
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.1e-50 202.6 129 76.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.7e-50 202.2 128 75.0
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 3.6e-50 201.8 118 79.7
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 3.6e-50 201.8 127 74.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 3.6e-50 201.8 124 75.8
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.6e-50 201.8 124 75.8
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 4.7e-50 201.4 118 79.7
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 4.7e-50 201.4 124 75.8
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.1e-50 201.1 128 76.6
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-49 200.3 124 75.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-49 200.3 124 75.0
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.3e-49 199.1 129 74.4
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.3e-49 199.1 124 75.0
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 2.3e-49 199.1 128 75.0
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 2.3e-49 199.1 124 74.2
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.0e-49 198.7 126 73.8
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.8e-49 197.2 124 74.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.0e-48 196.1 124 74.2
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.3e-48 195.3 124 74.2
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.3e-48 195.3 124 73.4
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 2.8e-47 192.2 130 73.1
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.8e-47 192.2 134 70.1
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 3.7e-47 191.8 171 59.6
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 3.7e-47 191.8 125 74.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 4.8e-47 191.4 130 72.3
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 4.8e-47 191.4 130 72.3
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 8.2e-47 190.7 130 72.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.4e-46 189.9 130 72.3
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.4e-46 189.9 130 72.3
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.4e-46 189.9 130 72.3
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 2.4e-46 189.1 129 70.5
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 2.4e-46 189.1 130 72.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.4e-46 189.1 130 68.5
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 3.1e-46 188.7 130 71.5
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 3.1e-46 188.7 130 71.5
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 5.3e-46 188.0 125 75.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 9.1e-46 187.2 128 74.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.2e-45 186.8 141 66.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.0e-45 186.0 130 66.9
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 7.7e-45 184.1 131 71.0
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 2.2e-44 182.6 130 68.5
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.8e-44 181.8 105 81.9
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 6.5e-44 181.0 124 68.5
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.0e-41 172.2 129 70.5
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 2.0e-40 169.5 118 69.5
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.8e-38 162.9 84 89.3
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.1e-35 153.7 82 90.2
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 6.7e-33 144.4 108 67.6
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 3.3e-32 142.1 84 81.0
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.6e-29 133.3 78 84.6
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.0e-28 130.6 80 78.8
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.9e-27 126.3 88 68.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.6e-26 123.2 89 68.5
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.4e-25 120.2 103 58.3
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.8e-23 111.7 61 90.2
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.5e-21 105.1 57 91.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 5.9e-21 104.8 96 50.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.9e-19 99.8 128 49.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.4e-17 93.6 68 69.1
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.0e-17 92.0 68 70.6
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.8e-15 85.9 99 46.5
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 9.2e-14 80.9 114 47.4
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.1e-11 73.9 48 75.0
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 8.0e-10 67.8 38 81.6
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 2.3e-09 66.2 59 49.2
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.2e-07 59.7 40 65.0
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 8.3e-07 57.8 54 64.8


User provided reference genes

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